Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g02420 ATGGCACCTAAACAAACCAAGGCAGAGAAAAAGATCGCTTACGATGGGAAGCTCTGCCAGCTTCTGGAAGAATACGGCCAAATCCTTGTGGTGAACGCGGATAACGTGGGATCCAACCAGCTCCAAAACATCCGCAAAGGCCTCCGCGGTGACTCCGTCGTCCTCATGGGGAAAAACACGATGATGAAGCGTTCCGTCAGGATACACGCAGAGAAAACAGGCAACAACGCATATCTCAACCTAATCCCCCTCCTTGTCGGCAATGTGGGATTGATTTTCACCAAGGGTGACTTGAAGGAGGTCAGTGAGGAGGTTGCTAAGTACAAGGTTGGAGCTCCTGCTCGCGTTGGGTTGGTTGCCCCAATTGATGTTGTTGTTCCTCCTGGCAACACGGGTCTTGATCCATCTCAGACCTCTTTCTTCCAGGTTCTGAATATTCCAACAAAGATTAACAAGGGTACTGTGGAAATCATTACCCCTGTGGAACTCATTAAGAAGGGAGAGAAGGTTGGATCTTCTGAAGTTGCATTGCTTGCTAAACTTGGCATAAGACCTTTCTCATATGGGCTTGTGGTTCTTTCCGTCTATGATAATGGGTCTGTATTTAGCCCTGAGGTCCTTGATCTTACCGAGGATGACCTCATTGAGAAGTTTGCCGCCGGTGTTTCCATGGTTACTTCTCTTTCGTTGGCCATCTCATTCCCAACACTTGCAGCTGCCCCACATATGTTTGTGAATGCCTATAAGAATGTCCTTTCTATTGCCAATTGTATGAAAAATGCAAGCAATCGGTGTCATTAA 801 0.4719 MAPKQTKAEKKIAYDGKLCQLLEEYGQILVVNADNVGSNQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHAEKTGNNAYLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGEKVGSSEVALLAKLGIRPFSYGLVVLSVYDNGSVFSPEVLDLTEDDLIEKFAAGVSMVTSLSLAISFPTLAAAPHMFVNAYKNVLSIANCMKNASNRCH 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g02420 266 CDD Ribosomal_P0_L10e 9 185 - -
Spst6g02420 266 FunFam 60S acidic ribosomal protein P0 113 186 - -
Spst6g02420 266 Gene3D - 114 185 IPR043164 -
Spst6g02420 266 Pfam Insertion domain in 60S ribosomal protein L10P 114 183 IPR040637 -
Spst6g02420 266 SUPERFAMILY Ribosomal protein L10-like 8 134 IPR043141 -
Spst6g02420 266 Pfam Ribosomal protein L10 8 108 IPR001790 -
Spst6g02420 266 Gene3D - 6 209 IPR043141 -
Spst6g02420 266 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 4 255 - -
Spst6g02420 266 PIRSF L10E 1 262 IPR030670 GO:0042254
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g02420 Spst-Chr6 52009035 52010092 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g02420 1 255 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 89.020 6.46e-166 460
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g02420 K02941 - gmx:100777482 479.944