Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g02417 ATGGAACTATCCCTCTCCCAAAACCCCCTTCATACAAACTCAGATTTTGAATCCTCTGGGGACTACCGCATTGGATCCTCCTCCCATTGCCTCTGGCATTCATTTTCATTACCAAACGCAAATCAATCCATGAAGGTTGTCACCATCAACGTGGGTGAGGGATGTGACGTCATGGAGTCCATCGTCGACGTTGCTCGTCGAAGCCAAGCCAGCCTCGTCGTCCATGGGGCCTCTGGTACTGTCGCCTCTGCGACCCTCCACAACACTGTCCGTGGTGCCCCTACGTACAGGATCTATGGCCCCTTCAACTTACTCTCCCTCACTGGTTCCTACTTTTACACCCCCCATGACACCCATCTCCCCGGAGCCACATCTTCCTTGTCATTTGGGATCCAATTGTGCACCTATAGTCGGATCATTTGTGGTCGCACCACTGGTACTGTCATCGCAGGTGGTGACGTCATCCTCATTGTCTCCACCTTCAAGAACCCTAAAATAAACAAATATGTTCCTGAAGGCGAAGAAAGGGATAACGTAGACAACGATAACAATAATAACCATGACCCTGGCTATTTGGCAGCTTTCAACTCTGCAGTAGAATCCAAAGCTGATGAATAA 618 0.4951 MELSLSQNPLHTNSDFESSGDYRIGSSSHCLWHSFSLPNANQSMKVVTINVGEGCDVMESIVDVARRSQASLVVHGASGTVASATLHNTVRGAPTYRIYGPFNLLSLTGSYFYTPHDTHLPGATSSLSFGIQLCTYSRIICGRTTGTVIAGGDVILIVSTFKNPKINKYVPEGEERDNVDNDNNNNHDPGYLAAFNSAVESKADE 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g02417 205 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 42 185 IPR014476 GO:0003680
Spst6g02417 205 Pfam Plants and Prokaryotes Conserved (PCC) domain 46 162 IPR005175 -
Spst6g02417 205 Gene3D - 44 178 - -
Spst6g02417 205 ProSiteProfiles PPC domain profile profile. 41 182 IPR005175 -
Spst6g02417 205 SUPERFAMILY AF0104/ALDC/Ptd012-like 42 168 - -
Spst6g02417 205 MobiDBLite consensus disorder prediction 171 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g02417 Spst-Chr6 51518970 51519587 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g02417 39 189 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 27.922 1.71e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g02417 - - pvu:PHAVU_006G007300g 144.05