Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g02407 ATGGACCCTTCTGCAAGGACGCCACGTGGCAGGCCCCCGGGCTCCAGGAATAGGACAAGCTCCATCTCTTCCCCAATGGCCGAGCCTGATAAGTCTTTCACTAAGGTTTTTGCTTTTAATGTACCTCCAAACAGGGACATCATGGAGTTCATCTTTGACATTGCTCACAAGGACCAAGTCAATGTATCTGTCCTTAATGCCTCTGGCATGATCAACATTGTTACCTTACACAACTCCCAGAAGGTCATGCTCCATGGGCCTTTCACCTTACTCTCCCTTACTGGTTCCTACTTATGCAAGAACCACTACACCCTTCACCCTGGAGTCACCTCTCCATTTCCCTTATGCTTTGGGATAAACCTTTCCGCCTCTCATGGTCAGATCATCGGTGGGGTCATCGGTGGTAGCGTCATCGCCGGTGAGGATGTCTGCCTCACGATCTCCACCTTCAAGAATCCTGGTTTTTTAAACTACACTTTTGAACAACATGACAATAGTAACGACAACCATGGTAATAAGTCTGGTGATTTCATTGGGGGTTGCAACCTGTTGGGGTTCAACTCATTTGGTTGTGGAGTTCGTGGGTGGCGAATGAATTAG 600 0.4817 MDPSARTPRGRPPGSRNRTSSISSPMAEPDKSFTKVFAFNVPPNRDIMEFIFDIAHKDQVNVSVLNASGMINIVTLHNSQKVMLHGPFTLLSLTGSYLCKNHYTLHPGVTSPFPLCFGINLSASHGQIIGGVIGGSVIAGEDVCLTISTFKNPGFLNYTFEQHDNSNDNHGNKSGDFIGGCNLLGFNSFGCGVRGWRMN 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g02407 199 ProSiteProfiles PPC domain profile profile. 31 172 IPR005175 -
Spst6g02407 199 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 5 169 IPR014476 GO:0003680
Spst6g02407 199 MobiDBLite consensus disorder prediction 13 28 - -
Spst6g02407 199 SUPERFAMILY AF0104/ALDC/Ptd012-like 34 153 - -
Spst6g02407 199 Pfam Plants and Prokaryotes Conserved (PCC) domain 36 151 IPR005175 -
Spst6g02407 199 MobiDBLite consensus disorder prediction 1 28 - -
Spst6g02407 199 Gene3D - 34 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g02407 Spst-Chr6 50296595 50297194 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g02407 6 176 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 29.775 1.31e-18 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g02407 - - pvu:PHAVU_006G031200g 229.565