Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g02406 ATGACTCCCTCTACAAGAAGGTCACGAGGCAAGTCTTCAAGCTCAAAGAACAAGTCAAGATTTACCAATCTCCAAATGGTCCAATCTAGTGATTCCTCTATGAATGTCTTCACTTTCAATGTAGCTCCAAACAATGATGTCATGGAGTCTATCTTTGACATTGCGCATCGAGACCATGTTAGTATCACCGTCATTAGTGCTTCTGGAACAATCAACAAGGTGACTCTCCAATCTTCAAGCCACAGTACATCCTCTCTCATACTCCATGGACCCTTTACCTTGGTCTCCCTCACTGGTTCCTATTTATACAACAACCAATACACCCTTCACCCCGGAGCCTCCCCACCCTTTCCCTTATCCTTTGGGATCAACCTCTCCACCTCTCAAGGTGAAGTCTTTTGCGGCATCGTTGGTGGTAGAGTCATTGCTGGTGAGAATGTTAGGGTCACAATCTCCATGTACAATAACCCTGATATTTTGAAGTACACGATCGAATGTTCAGAAAGGGATGACAATCATAATGACAATAATAACAACCTCAATTATAACAATAACCCTAATAATTTCAATGGGGGTGATGACTTGTTGGAGTTCAACCCAGTTACCCTTGGGGTTCGTGGGTGGTGA 627 0.4354 MTPSTRRSRGKSSSSKNKSRFTNLQMVQSSDSSMNVFTFNVAPNNDVMESIFDIAHRDHVSITVISASGTINKVTLQSSSHSTSSLILHGPFTLVSLTGSYLYNNQYTLHPGASPPFPLSFGINLSTSQGEVFCGIVGGRVIAGENVRVTISMYNNPDILKYTIECSERDDNHNDNNNNLNYNNNPNNFNGGDDLLEFNPVTLGVRGW 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g02406 208 CDD DUF296 35 144 IPR005175 -
Spst6g02406 208 MobiDBLite consensus disorder prediction 1 20 - -
Spst6g02406 208 SUPERFAMILY AF0104/ALDC/Ptd012-like 32 158 - -
Spst6g02406 208 FunFam AT-hook motif nuclear-localized protein 17 33 170 - -
Spst6g02406 208 Gene3D - 33 176 - -
Spst6g02406 208 Pfam Plants and Prokaryotes Conserved (PCC) domain 36 152 IPR005175 -
Spst6g02406 208 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 5 176 IPR014476 GO:0003680
Spst6g02406 208 ProSiteProfiles PPC domain profile profile. 31 181 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g02406 Spst-Chr6 50278745 50279371 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g02406 6 194 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 28.272 3.64e-20 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g02406 - - vun:114188422 208.379