Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g02398 ATGGAGAAAAATAAGAAAAGAAGGCTCAAAACACCTGCTCAGCTTACGGCCTTGGAAAATTTTTATAATGATCACAAATATCCCACGGAGGAAATGAAATCAGAACTTGCCGAAGAGTTGGAGTTGACGGAAAAGCAAATATCTGGATGGTTTTGCCACAGAAGATTGAAAGATAAAAAGTTGTTGAATGATGAAGTAGGTGCTAATGGACGACAAGATCGTTCAAGTGGTGTTATTCAGGATCGTGGCAGTGGTCTATTGCAGGATTCATGTGGAAGCACTAAACATGGTGATTATAGGTATTTGGATCTCAAAGAGGTTGAGAGTCATGGCCTCTATAACCATGATTTTGCAGTTGCAGATATGGCCTATGAACACAGGAACCATCTTTATACAGAAAATAATAGTGCAACAGATAACACATCATCTGAGAGTAGCTCATCTTTGCAAGACCGAATGCTTCCTCAAGGACAGGATCCATATGACATGGAGCCTTCTACTGATTTGATGCCAAACGGATCTCTTCCGCCCCTAAATCCCAAGGGTGCAAATAAAATGCGATATAAACCATCAGGATATTTAAAAGTGAAGGGAGAGATAGAACATGCTGCTATTACTGCGGTTAAAAAGCAGCTAGGAAAGCATTTTCAGGAAGAAGGACCATTACTTAGTGTTGAATTTGATACAGTTCCTCCAGGGGCATTTGAATGCCAAACTGCAGATCTAGCTAATGAAGGATACTATGATGCAAATCCTGCTCTTCCAAATTCACCAGAAGTCTCTGCTATGAAAAAGCAATCCAGTCTTAGCTCTAGACATGATTCATATTATACCAAATTAAGGTCCCAAGATTCACATATGGAAGGAGGTGACTGTGGCTCTTTGCATGATTCTGATTTCCAGGATAAGAAACTCCACAAGCGTATAAATCAAAGACCAACTTTTCACAGTTTTACCAATCATTTCCCTCACAAGAACTCTTCCCTGGATTTGTATGTAGACTCTACTGGGGATACATCTGCCTATAGTAGTGCTAAAAATCATAGGATGGGTGCTAAACATGGTTTTGAGGGGATGAGGTCTGATTCTGCTTCCAACCCTAGTGATCACTATGAAGACAATACCGCCGCAGTCAAGCCGATAGATTCACTCTTACATCTCTACGATAACAGTAATCTGAAGAATGTACAAAAGAATGAATATGTAAAATCTAAGCCTTCAATACATAATAAGTCTCAAATTTTCTTGAATGCTGAAGGAAAAGGGCTTACTAAAAGAATGGCCAAGGAAGAGAATTTTAATGGCGATAGAAAGTTAAAAATGCAATATCATGATCCAGATGGAATTAGGGTGCTTTCAAATGAAAAGATGGTTGCAAAGCGAGCAAAAGTTGACCCATTTGAAGAATATGATGTTAAACAAGCACCTGTTTCTGACCTGGAACCAAGGAAAACGCAAAGGTCTGCTGCAGAGATGCCATCTAGCTTTAGTCAGGATGAAACTGCTGAAATCAGTTCCTCAGTGGATTAA 1530 0.3954 MEKNKKRRLKTPAQLTALENFYNDHKYPTEEMKSELAEELELTEKQISGWFCHRRLKDKKLLNDEVGANGRQDRSSGVIQDRGSGLLQDSCGSTKHGDYRYLDLKEVESHGLYNHDFAVADMAYEHRNHLYTENNSATDNTSSESSSSLQDRMLPQGQDPYDMEPSTDLMPNGSLPPLNPKGANKMRYKPSGYLKVKGEIEHAAITAVKKQLGKHFQEEGPLLSVEFDTVPPGAFECQTADLANEGYYDANPALPNSPEVSAMKKQSSLSSRHDSYYTKLRSQDSHMEGGDCGSLHDSDFQDKKLHKRINQRPTFHSFTNHFPHKNSSLDLYVDSTGDTSAYSSAKNHRMGAKHGFEGMRSDSASNPSDHYEDNTAAVKPIDSLLHLYDNSNLKNVQKNEYVKSKPSIHNKSQIFLNAEGKGLTKRMAKEENFNGDRKLKMQYHDPDGIRVLSNEKMVAKRAKVDPFEEYDVKQAPVSDLEPRKTQRSAAEMPSSFSQDETAEISSSVD 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g02398 509 MobiDBLite consensus disorder prediction 132 184 - -
Spst6g02398 509 MobiDBLite consensus disorder prediction 488 509 - -
Spst6g02398 509 MobiDBLite consensus disorder prediction 463 509 - -
Spst6g02398 509 SMART HOX_1 3 65 IPR001356 GO:0003677
Spst6g02398 509 MobiDBLite consensus disorder prediction 463 486 - -
Spst6g02398 509 ProSiteProfiles 'Homeobox' domain profile. 1 61 IPR001356 GO:0003677
Spst6g02398 509 SUPERFAMILY Homeodomain-like 3 65 IPR009057 -
Spst6g02398 509 MobiDBLite consensus disorder prediction 280 299 - -
Spst6g02398 509 MobiDBLite consensus disorder prediction 132 154 - -
Spst6g02398 509 CDD homeodomain 5 60 IPR001356 GO:0003677
Spst6g02398 509 Pfam Homeodomain 5 60 IPR001356 GO:0003677
Spst6g02398 509 Gene3D - 1 76 - -
Spst6g02398 509 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 509 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g02398 Spst-Chr6 49393632 49397512 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g02398 2 509 Homeobox Transcription Factor Family AT4G03250 37.732 1.95e-73 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Spst6g02398 Homeodomain 6.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g02398 - - gmx:100812697 775.393