Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g02393 AAGAAGGAACAGAAAATCAAAGATGGAGATAGAAAGGCAAAACATGCCCGACCTGTCTCGATGGCATGCCTAGCGGTTAGAATTGTGGCAAGCGCCACAGGAAAGAAAGGGAGAAAAGAGAGTCCTCGCCCACATGTAAGGGTGCATGCTAGCTTCACCTTCTCATGCGATTTTAGAAGAGAAAACAGGGTCCATAAACTTAAAAAACTAGAGAACAAAGTTGTGGCTACTACAAGGAGGTTCCCTTCGGATTCCGGTGCCTTTGCGGACTGGTCAGCGACGCCCTCCGCCACCGGCCGCGGCGAAGACCTCTCTCTCGGCTTCAATGCTTCCTCCGCCGCCTCGCACGGCGGCGCAGTCATGTGGCCAGGGGCGTCGAGGTCATTCAATCACAACCTTTCACCTCACCACGATATCTTCGTGGTGGCGCCCGCGTCGTCGTTCCACCACCACCACCACAACCACAACGACGCCGTTTTGTCCGATCCAAACAACAACAATTCCAACGCAACTGCACTCGGCGTCAACGTCTTCCCTCTCCTCACCGCCACGCCATGCCTCACTCCCGAGAGCGAGGGCCTGATGGGAAACATCAATAACCACCGTAACAGAATTCAGCTGTGGCAACCACAGGAATCACCACAACACCAACACCAACACCAACACGCCGACGGCGTGTTGGCGAGTAACCACCGTAACAGAATTCAGTTATGGCAAGAGCACGACGAGTCTCCGCCGCCACAGCAACAACACGCGCACGAGCGTGAGGCGAGTGGGAGCGGCGCGACAACGTGTCAGGACTGCGGGAACCAGGCGAAGAAGGATTGTAGTCACAGGAGGTGCAGGACGTGCTGCAAGAGTAGGGGTTTCGATTGCGCCACACACGTGAAGAGCACGTGGGTGCCTGCGGCGCGACGGAGAGAGCGCCAGCTCATGGCGGTGACAGCAGCAGCAGTTGGGTCCAGTGGATCCACTTCCGCCACCAAGAAACCTAGGCTCGTGCCTTCTCAGACCACAACCACTTCGCATACTTCCACGTCCAATAACGCCACCACTCCTCCTCGGAGTTTCGACACTGGTTCTAGCCACCAAGGACCCTGTGTTTATGGTATGAGTTATTCTTGCCTGGATGTCCTGGCCATTAAGGGTTTGTTGAATGAGTTGGGTGCAGATGTGGGTTTGAGGGAGCCACTACCTTGCCAAGTGCGTGCACCAGCAGTGTTCAAGTGTGTTCGTGTGACTGCAGTGGATGATGGGGATGATGAGTATGCCTATCAAGCAGTGGTGAAAATTGGTGGCCATGTGTTCAAAGGGTTTCTCTATGATCATGGGGTTGAGGATAAAAGTGAGTTTCCCAATCTATCTGAATTGCATTTGGGTGGTGGTGGAAATGTTGCAAATGGAAATGATGGGATTGTAAGAAATGGGGTTTCATCTTCATCTCCAATGGTGGATCCTTCTGATGTCTATGCAGCTTCTGGTGGAGGGTTACTTGGAGGTTCATCAAACTATGGAAGTATATATTATTCTTTACCAA 1537 0.5296 KKEQKIKDGDRKAKHARPVSMACLAVRIVASATGKKGRKESPRPHVRVHASFTFSCDFRRENRVHKLKKLENKVVATTRRFPSDSGAFADWSATPSATGRGEDLSLGFNASSAASHGGAVMWPGASRSFNHNLSPHHDIFVVAPASSFHHHHHNHNDAVLSDPNNNNSNATALGVNVFPLLTATPCLTPESEGLMGNINNHRNRIQLWQPQESPQHQHQHQHADGVLASNHRNRIQLWQEHDESPPPQQQHAHEREASGSGATTCQDCGNQAKKDCSHRRCRTCCKSRGFDCATHVKSTWVPAARRRERQLMAVTAAAVGSSGSTSATKKPRLVPSQTTTTSHTSTSNNATTPPRSFDTGSSHQGPCVYGMSYSCLDVLAIKGLLNELGADVGLREPLPCQVRAPAVFKCVRVTAVDDGDDEYAYQAVVKIGGHVFKGFLYDHGVEDKSEFPNLSELHLGGGGNVANGNDGIVRNGVSSSSPMVDPSDVYAASGGGLLGGSSNYGSIYYSLP 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g02393 512 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 146 493 IPR007818 GO:0003700|GO:0006355
Spst6g02393 512 MobiDBLite consensus disorder prediction 241 264 - -
Spst6g02393 512 NCBIfam LRP1 C-terminal domain 398 445 IPR006511 -
Spst6g02393 512 MobiDBLite consensus disorder prediction 317 361 - -
Spst6g02393 512 Pfam Domain of unknown function (DUF702) 262 446 - -
Spst6g02393 512 NCBIfam putative zinc finger domain, LRP1 type 264 306 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g02393 Spst-Chr6 47846805 47851873 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g02393 75 489 C2H2 Transcription Factor Family AT5G12330 46.085 5.31e-93 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Spst6g02393 DUF702 8.2e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g02393 - - gmx:100816514 494.197