Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g02381 ATGACCCCAATCACAGATATTTCGGGGAAGATTCGCATCAAGTGTGCTGTGTGTCAAGATTTTGACCTCTGCATAGAGTGCTTCTCAGTTGGTGCTGAGGTGACACCTCACAAGAGCAACCATCCATATCGAATAATGATGCGAGCAATTTTTCTTGATAATCTATCTTTTCCACTTATATGTCCTGATTGGAATGCAGATGAAGAGATGTTACTTCTAGAGGCTATTGAGATGTATGGATTTGGGAATTGGAATGAAGTTGCAGAATATGTTGGAACAAAGAGCAAATCTCAATGTAATGACCACTATAATGCTGTGTATATGAATTCGCCATGTTTCCCTCTCCCTGATTTGTCTCATGTTATGGGAAAGAGCAGAGACGAACTTTTTGCCATGTTCAAGGGACATGAAGCCAAAAAAGAATTTTCTTCAACTGCAGAGCTTATGCTGAAAGAAGAGCCTCCCTTCTCTGATGGAATAAGCTATGAAGAAACAAAGATGGCAAAATTCAATAATCAAGCCATCTCTAGGTTGACCTCAGCATGTGGCAAATCTTACTCAAGCACAATTAAGAAGGCTTCCAACTTCAGCCAAAATAATGATGAAGTTAAGGTTGAAGAGTCTCAAGCAGATCGAAGCGTTGGAGAGAAGAAACCTAAATTATCAGGGGAAGATAGGCCTTCTATTACAGAGTTGAGTGGATACAGTTTTAAGAGAGAGGAATTTGATGTTGAATACGACAATGATGCAGAGCAAGTGTTGGCAGATATGGAATTTAAGAACACTGATACTGAAGCTGAACATAAAATGAAACTGCACGTGCTCCATATCTACTCAAAAAGGTTAGATGAAAGGAAGCGCAGAAAGCATTTTATACTTGAAAGAGAGTTACTTTATCCTGATCCTTTTGAGAAATCTCTCTTGCCTGAAGAGCTTGAAATATGTCAGCAGTACAAGGTGTTCATGCGGTTTCACTCAAAAGAAGAGCATCAGGATTTTCTAAAAAATATTATTGAAGAACACAGGCTTGTCAACAGAATACATGATTTACAGGTATTGCATTCTTCTACAGACTATGATGATCTCATCATGCTTAATCTAGAGATATTGTCGCTAGTTTTTTTTCTATAG 1131 0.3837 MTPITDISGKIRIKCAVCQDFDLCIECFSVGAEVTPHKSNHPYRIMMRAIFLDNLSFPLICPDWNADEEMLLLEAIEMYGFGNWNEVAEYVGTKSKSQCNDHYNAVYMNSPCFPLPDLSHVMGKSRDELFAMFKGHEAKKEFSSTAELMLKEEPPFSDGISYEETKMAKFNNQAISRLTSACGKSYSSTIKKASNFSQNNDEVKVEESQADRSVGEKKPKLSGEDRPSITELSGYSFKREEFDVEYDNDAEQVLADMEFKNTDTEAEHKMKLHVLHIYSKRLDERKRRKHFILERELLYPDPFEKSLLPEELEICQQYKVFMRFHSKEEHQDFLKNIIEEHRLVNRIHDLQVLHSSTDYDDLIMLNLEILSLVFFL 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g02381 376 Pfam Zinc finger, ZZ type 11 38 IPR000433 GO:0008270
Spst6g02381 376 SMART zz_5 5 39 IPR000433 GO:0008270
Spst6g02381 376 CDD SANT 64 104 IPR001005 -
Spst6g02381 376 SMART sant 60 109 IPR001005 -
Spst6g02381 376 PIRSF Txn_adaptor_ADA2 4 357 IPR016827 GO:0003713|GO:0006357|GO:0035065
Spst6g02381 376 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 111 IPR017930 -
Spst6g02381 376 SUPERFAMILY RING/U-box 10 46 - -
Spst6g02381 376 ProSiteProfiles Myb-like domain profile. 64 107 IPR001005 -
Spst6g02381 376 FunFam Transcriptional adapter 2 57 109 - -
Spst6g02381 376 Gene3D - 58 109 - -
Spst6g02381 376 MobiDBLite consensus disorder prediction 204 225 - -
Spst6g02381 376 ProSiteProfiles SANT domain profile. 59 111 IPR017884 -
Spst6g02381 376 ProSiteProfiles Zinc finger ZZ-type profile. 1 51 IPR000433 GO:0008270
Spst6g02381 376 Gene3D - 2 46 IPR043145 -
Spst6g02381 376 SUPERFAMILY Homeodomain-like 57 110 IPR009057 -
Spst6g02381 376 CDD ZZ_ADA2 6 46 IPR041983 -
Spst6g02381 376 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 5 351 - -
Spst6g02381 376 MobiDBLite consensus disorder prediction 200 229 - -
Spst6g02381 376 Pfam Myb-like DNA-binding domain 63 104 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g02381 Spst-Chr6 44560836 44573255 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g02381 6 351 EF-hand Containing Proteins AT3G07740 56.250 3.89e-135 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Spst6g02381 Myb_DNA-binding 3.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g02381 K11314 - gmx:100779424 610.527