Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g02375 ATGGTGTATTGCCGCTCTGATGCTGCATGCTTATGTTTGTCTTGTGATCGGAATGTTCATTCTGCTAATGCCCTTTCCAGGCGCCATTCACGCACCCTTTTGTGTGAAAGATGCAATTCACAACCTGCCTTTGTTAGGTGTGTTGAAGAGAAAATTTCGCTGTGTCAGAGTTGTCTTTGGTTGGGTCATGGAGCCTCTACATCATCTTCAACGCATAAGAGACAAGCAATCAGTTGCTACTCTGGCTGCCCTTCAGCGGCGGAACTATCTTCAATATGGTCATTTGTGTTGGATATCCCTGCCATTAGTGAGTCTACATGTGAGCAAGAACTAGGTTTAATGAGTATTAATGAGAACAATAACAAGAGTGTTGGGGTTCCTCCTAAGAACCGGAATGTGTCTGGTTCAGATCAAGTTACTGATCTACCTGCTTTGGACAAGTCTTTGGTTGGTATATCTTTAATGCCTGAGTCAAGCTCTGAATCTCGTATTCTGGACCAGCCAGCTGGGCCTGCCAATGAATGTCTGCCAAAGCTGTACTGTCCTGGTACAAAATGCCCTGCATTATGTGATGATGATAATCTGTATGATGATTTTGACATGGATGAAGTGGATCTAAATCTTGAGAACTATGAAGAACTTTTTGGTGTGGCCCTCAGTCATTCTGAAGAGCTATTTGAAAATGGTGGAATTGATAGCTTGTTTGGGACAAAGGACATGTCTGCCGGAGATTCCAATTGTCAGGATGCTATTGCTGCTGAGGGATCATCGGTTGGACTGATCAATACAATACAACCGGCTTGCAGCAATGCAGCATCAGCCGATTCCATTTTGAGTACTAAAACCGAACCGATTCTTTGTTTTACTGGGAGGCAAACACAATCAAACCTTTCTTTTTCTGGCATTACCGGGGAGAGTAGTGCTGCAGACTATCAAGACTGTGGGGCTTCTTCCATGCTTCTCATGGGGGAACCTCCTTGGTTTGCTCCTTGTCCTGAGAATTCCCTACAATCTGCCAACCGCAGCAATGCTGTCTTGCGTTACAAGGAAAAGAAGAAGGCAAGAAAGTTCGACAAACAAGTACGGTATGCCTCTCGCAAGGCAAGGGCAGATGTCAGAAGGCGTGTGAAAGGGCGGTTTGTCAAAGCCGGTGACGTCTATGATTATGACCCTTTGAGCGCGACCAGAAGCTGCTGA 1197 0.4536 MVYCRSDAACLCLSCDRNVHSANALSRRHSRTLLCERCNSQPAFVRCVEEKISLCQSCLWLGHGASTSSSTHKRQAISCYSGCPSAAELSSIWSFVLDIPAISESTCEQELGLMSINENNNKSVGVPPKNRNVSGSDQVTDLPALDKSLVGISLMPESSSESRILDQPAGPANECLPKLYCPGTKCPALCDDDNLYDDFDMDEVDLNLENYEELFGVALSHSEELFENGGIDSLFGTKDMSAGDSNCQDAIAAEGSSVGLINTIQPACSNAASADSILSTKTEPILCFTGRQTQSNLSFSGITGESSAADYQDCGASSMLLMGEPPWFAPCPENSLQSANRSNAVLRYKEKKKARKFDKQVRYASRKARADVRRRVKGRFVKAGDVYDYDPLSATRSC 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g02375 398 Pfam CCT motif 341 383 IPR010402 GO:0005515
Spst6g02375 398 ProSiteProfiles CCT domain profile. 341 383 IPR010402 GO:0005515
Spst6g02375 398 ProSiteProfiles Zinc finger B-box type profile. 30 77 IPR000315 GO:0008270
Spst6g02375 398 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 385 - -
Spst6g02375 398 CDD Bbox1_BBX-like 2 34 - -
Spst6g02375 398 CDD Bbox1_BBX-like 34 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g02375 Spst-Chr6 43118678 43123405 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g02375 1 397 C2C2-CO-like Transcription Factor Family AT3G07650 55.122 7.98e-144 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Spst6g02375 CCT 1.1e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g02375 - - gmx:100796748 721.85