Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g02374 ATGGAGTTCAACAAATCTCGATCTGCAACAATGGCTTCCAGAAAATCCGACAACCCTCACTCCGGTGACGGCGCCAGTCCCGGGAAAATCTTCATCGGAGGGTTAGCCAAAGACACCACCCTAGAGACTTTTGTGAAGTACTTCGAGAAGTACGGCGAGATAACGGACTCTGTTATCATGAAGGACCGTCAAACGGGTCGACCCAGGGGCTTCGGGTTCATCACCTACGCGGATCCCTCCGTCGTTGACCAAGTAATTCAGGAGAACCACGTCATCAACGGGAAGCAGGTAGAGATTAAGAGGACCATTCCCAAGGGTTCGTCGCAGGCTAATGACTTCAAAACCAAGAAGATCTTTGTCGGCGGTATTCCAACATCAGTATCAGAAGATGAGTTCAAGAACTTTTTCTCTAAGTATGGGAAGGTGGTGGAGCATGAAATTATACGAGACCACACCACAAAGCGTTCCCGGGGATTTGGATTTATAGTTTTTGACAGTGAAAAGGTTGTGGATAATATTTTGGCGGATGGGAACATGGTTGATATGGCTGGTACCCAGGTTGAGATCAAGAAGGCTGAACCAAAGAAATCCTCAAACCCAGCTTCTCTTGCTCCATTTGCTAGTGACACTAGGGCACGTTCTTACAATGATGGTTTCAGTGGATTTGGCGATTCTTATGGAAGTTTTGGCGGTAGCGGGTATGGTCCTGGTTCTTATAGATCAATTGGAGGGTTTGGGGGTAGGCTTGGAGATTATGGTGGGTATGGGGCTGGAGATGACTTTGGTGGTAGTTTTGGTGGTTATGCTGGTGGCTATGCTGGTTTTCGAGGAGAATCATCATTTGGCTACTCTGGTCGCTATGGATCTTACATGGGTGGCCTTGGTGCTGGTTATGGTGGCAGTGGGTTAGGTGCATATGGACGAGGTGCTGGGGGCTATGGAAGCTATGGTGGTCCAGGTGCTGGTGGGGGTTATGAATCTGGCCCGGGTGCTGGTTATGGCGGAGCTGGAGGTGGAGTCTATCCCAGTAGGGGAAGCTATGGTGGCAGTAGTCGTTACCATCCTTACACAAGATAG 1077 0.493 MEFNKSRSATMASRKSDNPHSGDGASPGKIFIGGLAKDTTLETFVKYFEKYGEITDSVIMKDRQTGRPRGFGFITYADPSVVDQVIQENHVINGKQVEIKRTIPKGSSQANDFKTKKIFVGGIPTSVSEDEFKNFFSKYGKVVEHEIIRDHTTKRSRGFGFIVFDSEKVVDNILADGNMVDMAGTQVEIKKAEPKKSSNPASLAPFASDTRARSYNDGFSGFGDSYGSFGGSGYGPGSYRSIGGFGGRLGDYGGYGAGDDFGGSFGGYAGGYAGFRGESSFGYSGRYGSYMGGLGAGYGGSGLGAYGRGAGGYGSYGGPGAGGGYESGPGAGYGGAGGGVYPSRGSYGGSSRYHPYTR 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g02374 358 MobiDBLite consensus disorder prediction 1 20 - -
Spst6g02374 358 Gene3D - 28 106 IPR012677 -
Spst6g02374 358 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 28 104 IPR000504 GO:0003723
Spst6g02374 358 SUPERFAMILY RNA-binding domain, RBD 17 108 IPR035979 GO:0003676
Spst6g02374 358 Gene3D - 107 227 IPR012677 -
Spst6g02374 358 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 194 IPR000504 GO:0003723
Spst6g02374 358 SMART rrm1_1 117 190 IPR000504 GO:0003723
Spst6g02374 358 SMART rrm1_1 29 100 IPR000504 GO:0003723
Spst6g02374 358 MobiDBLite consensus disorder prediction 1 26 - -
Spst6g02374 358 SUPERFAMILY RNA-binding domain, RBD 104 200 IPR035979 GO:0003676
Spst6g02374 358 FunFam Heterogeneous nuclear ribonucleoprotein 1 109 234 - -
Spst6g02374 358 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 30 96 IPR000504 GO:0003723
Spst6g02374 358 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 118 175 IPR000504 GO:0003723
Spst6g02374 358 FunFam Heterogeneous nuclear ribonucleoprotein 1 27 108 - -
Spst6g02374 358 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 13 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g02374 Spst-Chr6 43100926 43103658 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g02374 14 187 Eukaryotic Initiation Factors Gene Family AT1G71770 25.521 8.19e-13 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g02374 K12741 - gmx:100801373 413.69