Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g02303 ATGACCGAACCTTCAACAATCAGCTTCTTCTCCAATTTCCTTCCCTCCTTCCGCCCACAAACCTGTGTATCTCACCGTCCCCTGAGCCTCCCGCGGAAGCACCAGGTTCACTGCTCGGTGTCCGCCGGTGCTACTCCCCAGAATGCGGTGGCTTGGGGATGCGAAATTGAGTCGCTGGAGAGCGCTTCGGGGCTGCAGAGGTGGCTGTCAGAGTCAGGGCTTCCGCCGCAGAAGATGGGGATAGATAGGGTGGAGGTGGGAGAGAGAGGACTTGTAGCTTTGAAGAACATAAGAAAAGGGGAGAAGCTGCTCTTTGTGCCTCCGTCTCTTGTCATTACTCCAAATTCTGAGTGGAGTCATCCTGAAGCTGGTGAAGTATTGAAAAGAAATTCAGTGCCAGATTGGCCTTTGCTTGCAACTTACCTCATAAGTGAAGCTAGCCTCATGGAATCTTCAAGATGGAGCAATTATATATCAGCCTTACCTCGTCAACCTTATTCGCTTCTTTACTGGTCACAAGCAGAACTAGATCGCTACTTGGAAGCTTCACAGATTAGAGAGAGAGCAATCGAAAGGATCAATAATGTTATTGGAACATACAATGATTTGAGGCTCAGAATATTTTCCAAGTACCCTGATATATTCCCTGATGAGGTGTTCAACATAGAGTCCTTCAAATGGTCATTTGGTATTCTTTTCTCCCGCATGGTCCGGTTACCCTCAATGGATGGAAAGGTTGCCTTGGTTCCTTGGGCTGATATGCTAAATCATAGTTGTGAGGTGGAGACATTTTTGGATTATGACAAGCAATCAAAGGGAATAGTCTTCACGACGGATCGGCCTTATCAACCAGGTGAGCAGGTGTTTATTTCCTATGGAAAAAAGTCAAATGGGGAGCTTTTGCTATCTTATGGATTTGTCCCGAAGGAAGGTGCCAATCCTAGTGATTCAGTTGAGTTGTCACTGTCACTGAAGAAATCCGATGCGTCTTATAAGGAGAAGTTAGAACTGTTGAAGAAATATGGATTATCTGCATCTCAGTGTTTTCCTATACAGATAACTGGTTGGCCACTGGAATTAATGGCCTATGCTTATTTGGCTGCCAGTCCTCCAAGCATGAGAGAAAATTTTGAAGAGATGGCTACTGCAGCATCAAATAATACCACCTCCAAGAAGGATTTGAGATATCCTGAAATAGAGGAGCAAGCATTGCAATTCATACTCGACAGCTGTGAAGCAAGCATATCAAAATACAACAAGTTCTTGCAGGCAAGTGGATCACTGGATTTGGATGTGACTTCTCCTAAACAACTAAACAGAAGGCTCTTTCTGAAACAGCTAGCTGTGGACTTGTGTAATAGTGAGCGAAGGATATTATTTCGTGCTCAATACATACTGAGACGAAAACTGAGGGACATGAGAGCTGGTGAATTAAGAGCCCTGAAAATATTCAACGGTTTCCGGAAATTTTTCCAATGA 1479 0.4462 MTEPSTISFFSNFLPSFRPQTCVSHRPLSLPRKHQVHCSVSAGATPQNAVAWGCEIESLESASGLQRWLSESGLPPQKMGIDRVEVGERGLVALKNIRKGEKLLFVPPSLVITPNSEWSHPEAGEVLKRNSVPDWPLLATYLISEASLMESSRWSNYISALPRQPYSLLYWSQAELDRYLEASQIRERAIERINNVIGTYNDLRLRIFSKYPDIFPDEVFNIESFKWSFGILFSRMVRLPSMDGKVALVPWADMLNHSCEVETFLDYDKQSKGIVFTTDRPYQPGEQVFISYGKKSNGELLLSYGFVPKEGANPSDSVELSLSLKKSDASYKEKLELLKKYGLSASQCFPIQITGWPLELMAYAYLAASPPSMRENFEEMATAASNNTTSKKDLRYPEIEEQALQFILDSCEASISKYNKFLQASGSLDLDVTSPKQLNRRLFLKQLAVDLCNSERRILFRAQYILRRKLRDMRAGELRALKIFNGFRKFFQ 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g02303 492 FunFam Rubisco methyltransferase family protein 312 475 - -
Spst6g02303 492 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 323 489 IPR036464 -
Spst6g02303 492 CDD SET_RBCMT 72 307 IPR044431 GO:0016279|GO:0018022
Spst6g02303 492 Pfam SET domain 89 293 IPR001214 GO:0005515
Spst6g02303 492 SUPERFAMILY SET domain 62 310 IPR046341 -
Spst6g02303 492 Gene3D set domain protein methyltransferase, domain 1 34 306 - -
Spst6g02303 492 ProSiteProfiles SET domain profile. 77 293 IPR001214 GO:0005515
Spst6g02303 492 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 46 306 - -
Spst6g02303 492 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 60 429 - -
Spst6g02303 492 PIRSF RMT_SET 1 489 IPR011192 GO:0009507|GO:0030785
Spst6g02303 492 Gene3D - 312 479 IPR036464 -
Spst6g02303 492 Pfam Rubisco LSMT substrate-binding 326 459 IPR015353 -
Spst6g02303 492 SMART set_7 77 299 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g02303 Spst-Chr6 38347889 38359486 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g02303 64 262 NAC Transcription Factor Family AT3G56570 22.549 1.45e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Spst6g02303 SET 1.2e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g02303 - - gmx:100803319 872.848