Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g02279 ATGTTAGGGTTTTCAGGAAGCGTGTCTTTGAGGCTTGAGAGAGAGGCGCGGCTTGATATGGACGAGGCTTTTGACCACTCGAATAAGTCAATGCAGACACAACGATACTACTACCACGTGTCGAGGATGAATAATCAACACACCACGCTTGTGCCTGGTGATACTTTCAAATTGCACATCAAAGTTTTATATCACTCAATCCACACAACCCCAGAAGGGTTACAGCATCGATTTTCTCCAAGATCCATACCCTCCCATGATTTCTTCCAAGAGGGTCAAAATTTCTTGCACTCACTGTTGTCAAGCACACGCTTCTCCATTGAATCTCTTGAGGAAATAGCAGAGGGGGTTGTTTCTACTGTTCGAGAATTGTTTCATGTTGGTAGCGTTGATGCTCTTCTTTCTTTGGAATCTCAACATCGAGTCATCCCTTTATCAGTGACCGTTATAATATTGAATTATGATGTGGATGCAGCCAGGGAAGCGTCGAGGCAGTGGTCTAGAATGAATAATGCATCCAACGAAGCCATGATAAAGACCTTTCTGAAGAAATGTACAGTTATGAGAGGGAGTGAAGATTGTTCTATCTGCTTGGATAGGTTGAATATCAAGGCTGAGTGCTACACAATGCCATGCCATCATGCATTTCATCTACCATGTATTCTCACATGGCTCAAAACTCGTCCCCTGTGTCCCTTGTGTCGCTCCCCTTTGCCAACTCTTGAAAACTAG 732 0.4385 MLGFSGSVSLRLEREARLDMDEAFDHSNKSMQTQRYYYHVSRMNNQHTTLVPGDTFKLHIKVLYHSIHTTPEGLQHRFSPRSIPSHDFFQEGQNFLHSLLSSTRFSIESLEEIAEGVVSTVRELFHVGSVDALLSLESQHRVIPLSVTVIILNYDVDAAREASRQWSRMNNASNEAMIKTFLKKCTVMRGSEDCSICLDRLNIKAECYTMPCHHAFHLPCILTWLKTRPLCPLCRSPLPTLEN 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g02279 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 241 IPR013083 -
Spst6g02279 243 Pfam Ring finger domain 193 235 IPR001841 -
Spst6g02279 243 SUPERFAMILY RING/U-box 188 240 - -
Spst6g02279 243 SMART ring_2 194 234 IPR001841 -
Spst6g02279 243 ProSiteProfiles Zinc finger RING-type profile. 194 235 IPR001841 -
Spst6g02279 243 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 81 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g02279 Spst-Chr6 35157161 35160703 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g02279 152 243 C3H Transcription Factor Family AT5G17600 35.052 8.31e-13 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g02279 - - pvu:PHAVU_006G017900g 273.478