Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g02268 ATGGCTTTCACACTAGACACTAGGTTTGAGGAGAACATGGTTTTCTCTTTTGAGTCTCAGAAGTCAGTGCCAGCACCCTTCCTCACAAAGACCTACCAGCTTGTTGATGACCCTCTCACTGACCACATTGTTTCATGGGGTGAAGATGAAACTACATTTGTTGTGTGGAGACCCCCTGAGTTTTCCACAGATCTTCTTCCCAACTACTTCAAACACAACAACTTCTCAAGCTTTGTTAGGCAACTCAACACCTATGGTTTCAAGAAGGTAGTTGCTGATAGGTGGGAGTTTGCTAATGAGCACTTCAGAAAAGGAGCTAAGCACCTTTTATGTGAAATACACAGGAGGAAAACACCTCAGCAACATCACCAACTCTACCATGACCAACCACCATCCCAGATTCTTCAACAAGATGAAAGTATCTGCTGGCTTGACACTCCACTTCCATCTCCAAAACCAAGCTCAGACATTATAACAGCACTTTCTGAAGACAACCAAAGACTCAGGAGAAAGAACTTCATGCTCCTCTCAGAACTTAGTCACATGAAGAGTTTGTACAATGACATCATATATTTCATCCAAAACCATATAAAACGACCACCCTTTGAGCAAAGAACCAGCAGTGCCATTCCAAAGCTGGTGGAGTTGGACTCGTGGCATGAGTCTCCAAATGACACAGGTCTCAGAACTTCAAAAAGTTATATTGTGGATAATTCTTTGATTACTTGTACTGAAGAATCAAACAGTTCTGTGAAGCTCTTTGGGGTCCCTCTGAGTGCTCTAAGTGGCAGAAAGAGATTGCACCCAGACAACATTAATTGA 822 0.427 MAFTLDTRFEENMVFSFESQKSVPAPFLTKTYQLVDDPLTDHIVSWGEDETTFVVWRPPEFSTDLLPNYFKHNNFSSFVRQLNTYGFKKVVADRWEFANEHFRKGAKHLLCEIHRRKTPQQHHQLYHDQPPSQILQQDESICWLDTPLPSPKPSSDIITALSEDNQRLRRKNFMLLSELSHMKSLYNDIIYFIQNHIKRPPFEQRTSSAIPKLVELDSWHESPNDTGLRTSKSYIVDNSLITCTEESNSSVKLFGVPLSALSGRKRLHPDNIN 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g02268 273 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 21 209 IPR027725 -
Spst6g02268 273 SMART hsfneu3 23 116 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst6g02268 273 Pfam HSF-type DNA-binding 27 116 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst6g02268 273 Gene3D - 18 118 IPR036388 -
Spst6g02268 273 SUPERFAMILY "Winged helix" DNA-binding domain 24 116 IPR036390 -
Spst6g02268 273 ProSitePatterns HSF-type DNA-binding domain signature. 66 90 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst6g02268 273 FunFam Heat stress transcription factor B-4 19 117 - -
Spst6g02268 273 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst6g02268 273 PRINTS Heat shock factor (HSF) domain signature 78 90 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst6g02268 273 PRINTS Heat shock factor (HSF) domain signature 27 50 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g02268 Spst-Chr6 33254647 33255986 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g02268 11 268 HSF AT1G46264 48.052 2.31e-85 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Spst6g02268 HSF_DNA-bind 4.1e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g02268 K09419 - gmx:100806150 488.034