Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g02237 ATGTCGCCGAGCTTCGTCTTCGACCCTCCCAGCGACGAAGAAGTCGAACTCTCCGAACGAGAAGAGGAAGAAGAAGACGAAGAAGAACCAGAAGAAGTTGAGTCAGGATCAGGTTCTGAGACAGAAGAAGAAGAAGGGCACAAAGAAGCGCGGGTTTCGAAGAAGAAAACGCAGTCTCCATGGGACTTCGCTAAATACACGGAATCAGTTGCTGAGGAACACGCTCGCAGGAGCACAACCTCAGTGGACGAGAAAATCTCCAAAGCACTCCAACAACGTTCCACGCCGCTCGTTGCTGAGCTTGACCACAGCTCCGAGTCCGAACCTGATGAACAAGTATTTGTTGTTGGGATTATTTTGGGGATGGAGGAGGGGTCTGAAGATTATAGACCCGATGAAGAAGAAGAAGAAGAGGGTAATGATGGTGATAGCAAGTCCTTTTTTGCTCCTTCTGATGGAGCCTCTTTCCACGCTGACTCCTTCTTGCAGCTTAATTTGTCTCGTCCTTTGCTCCGGGCTTGTGAGGCCCTGGGATATGCTAAACCAACGCCAATTCAGGCAGCATGTATTCCATTGGCATTGTCTGGTCGTGATATATGTGGTAGTGCCATTACCGGGTCAGGAAAGACAGCTGCGTTTGCACTACCTACATTGGAGAGGTTGTTGTTCCGTCCAAAACGAATGCGAGCAATAAGGGTCCTCATTCTTACTCCAACCAGAGAGTTGGCAGTCCAAGTTCACAGTATGATAGAGAAGCTTGCTCAGTTTACTGATATAAGGTGTTGCCTGGTTGTTGGGGGTCTGTCAACAAAGGTGCAAGAGGCTGCTTTGAGAACAATGCCAGACATTGTTGTGGCTACTCCTGGACGCATGATTGACCATTTACGCAATGCTATGTCTGTGGATTTGGATGATCTTGCTGTTCTAATACTTGACGAGGCAGATCGTCTTTTGGAGCTTGGATTTAGTGCTGAAATTCAAGAACTTGTTCGCATGTGTCCCAAGAAAAGGCAGACTATGTTGTTTTCAGCAACAATGACTGAGGAGGTTGATGAACTTATCAAACTTTCCCTGTCAAAGCCCCTGCGTCTTTCTGCTGACCCATCTACCAAACGGCCAGCAACCTTGACTGAGGAAGTTGTTAGAATACGAAGAATGCGTGAAGTAAACCAGGAAGCTGTTCTTCTTGCAATGTGCTCGAAAACTTTTGCTTCCAAAGTCATCATCTTCAGTGGAACAAAGCAAGCTGCACATAGATTAAAGATTATATTTGGGTTAAGTGGATTAAAAGCTGCTGAGCTTCATGGAAATCTTACCCAAGCCCAGCGCCTGGAAGCTTTGGAACAGTTTAGGAAGCAGCAAGTTGATTTTTTGGTTGCAACAGATGTGGCTGCCCGTGGCCTTGACATTATTGGTGTTCAAACAGTTATCAACTTTGCATGTCCACGTGATCTTACTAGCTATGTTCATCGAGTGGGTCGTACTGCAAGAGCTGGACGGGAAGGATATGCTGTCACTTTTGTGACTGACAATGACCGATCACTTTTAAAAGCCATTGCCAAGAGGGCTGGTTCAAAGTTGAAAAGCCGCATTGTTGCCGAGCAATCTATACTTAGGTGGTCTCATATTATTGAGCAAATGGAGGATCAAATTAATGAAGTTCTTCAAGAAGAGAGAGAAGAAAGAGTCCTAAGGAAAGCTGAAATGGAGGCCACGAAGGCCGAAAACATGATTGCACATAGGGAAGAAATCTTTTCCCGTCCGAAAAGAACATGGTTTGTCACAGAGAAGGAGAAAAAGCTTGCTGCAAAAGCAGCCAAGGCATCTTCCTCCATAGAAAAGAACAAGAGTTCTGGGAAAGAGGTAATTAGTGCCGAACAAGCTGAAGACCTCAAAATGAAGGAAAAGAGGAAGCGCGAGCGCGAGAAAAATTTGCCTAGAAAGAAGCGTAGAAAGTTGGAAGCAGCTAGAGAGATGTTGGAGGATGAGGAGCAGGATGGTGAACAAGTAGAGGACAAGAGGATGAATAAAAAAGAAAAAGGTGGAATGTCACTTGTTGATCTTGCTTACCGAAGGGCAAAAGCAGTGAAGGCTGTGAAGAAGGCATTAGATTCTGGCAAGATTGTGAAGAAGAGTCAAAAGAAACCTAGTAATGCTCCACGAAAAACTCCTTCAAGGACTGAAGAGATGAGGGATCTATTCCAGACTGACATGAAGGATAAAAAGCCAAAAAGAAGAGGTGTTGGAGGAGGAAAGAAGTCGAAGAGTTCATTCAAAAGCAAGTCAAGGTACAAGCGCAAGTAG 2304 0.4531 MSPSFVFDPPSDEEVELSEREEEEEDEEEPEEVESGSGSETEEEEGHKEARVSKKKTQSPWDFAKYTESVAEEHARRSTTSVDEKISKALQQRSTPLVAELDHSSESEPDEQVFVVGIILGMEEGSEDYRPDEEEEEEGNDGDSKSFFAPSDGASFHADSFLQLNLSRPLLRACEALGYAKPTPIQAACIPLALSGRDICGSAITGSGKTAAFALPTLERLLFRPKRMRAIRVLILTPTRELAVQVHSMIEKLAQFTDIRCCLVVGGLSTKVQEAALRTMPDIVVATPGRMIDHLRNAMSVDLDDLAVLILDEADRLLELGFSAEIQELVRMCPKKRQTMLFSATMTEEVDELIKLSLSKPLRLSADPSTKRPATLTEEVVRIRRMREVNQEAVLLAMCSKTFASKVIIFSGTKQAAHRLKIIFGLSGLKAAELHGNLTQAQRLEALEQFRKQQVDFLVATDVAARGLDIIGVQTVINFACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSILRWSHIIEQMEDQINEVLQEEREERVLRKAEMEATKAENMIAHREEIFSRPKRTWFVTEKEKKLAAKAAKASSSIEKNKSSGKEVISAEQAEDLKMKEKRKREREKNLPRKKRRKLEAAREMLEDEEQDGEQVEDKRMNKKEKGGMSLVDLAYRRAKAVKAVKKALDSGKIVKKSQKKPSNAPRKTPSRTEEMRDLFQTDMKDKKPKRRGVGGGKKSKSSFKSKSRYKRK 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g02237 767 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 53 719 - -
Spst6g02237 767 Coils Coil 625 645 - -
Spst6g02237 767 Gene3D - 129 365 IPR027417 -
Spst6g02237 767 SMART helicmild6 414 499 IPR001650 -
Spst6g02237 767 Gene3D - 366 535 IPR027417 -
Spst6g02237 767 MobiDBLite consensus disorder prediction 12 39 - -
Spst6g02237 767 CDD DEADc_DDX27 170 365 - -
Spst6g02237 767 MobiDBLite consensus disorder prediction 606 684 - -
Spst6g02237 767 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 375 538 IPR001650 -
Spst6g02237 767 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 310 318 IPR000629 -
Spst6g02237 767 MobiDBLite consensus disorder prediction 1 87 - -
Spst6g02237 767 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 159 187 IPR014014 GO:0003724
Spst6g02237 767 MobiDBLite consensus disorder prediction 40 58 - -
Spst6g02237 767 MobiDBLite consensus disorder prediction 124 149 - -
Spst6g02237 767 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 190 364 IPR014001 -
Spst6g02237 767 CDD SF2_C_DEAD 376 508 - -
Spst6g02237 767 MobiDBLite consensus disorder prediction 619 640 - -
Spst6g02237 767 MobiDBLite consensus disorder prediction 721 744 - -
Spst6g02237 767 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 231 519 IPR027417 -
Spst6g02237 767 MobiDBLite consensus disorder prediction 67 83 - -
Spst6g02237 767 MobiDBLite consensus disorder prediction 699 767 - -
Spst6g02237 767 Pfam Helicase conserved C-terminal domain 396 499 IPR001650 -
Spst6g02237 767 MobiDBLite consensus disorder prediction 669 684 - -
Spst6g02237 767 Coils Coil 650 680 - -
Spst6g02237 767 SMART ultradead3 178 379 IPR014001 -
Spst6g02237 767 MobiDBLite consensus disorder prediction 127 141 - -
Spst6g02237 767 MobiDBLite consensus disorder prediction 745 767 - -
Spst6g02237 767 Coils Coil 544 577 - -
Spst6g02237 767 Pfam DEAD/DEAH box helicase 183 353 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g02237 Spst-Chr6 31018055 31030735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g02237 138 516 Eukaryotic Initiation Factors Gene Family AT3G13920 33.508 2.87e-51 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g02237 K13181 - gmx:100776684 1109.36