Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g02227 ATGGAAGACAAGATAGAGATTGCAGACAAGAAGGTGCTGGTTGATATTGTAAAATTGGTACAAAAAAGAGGCTTGAGGGGTAAACTGGGAGGCTGGAAAGAATTCTTGAACAGTCATGACAGAAAGTCTGGGGCAAGATTGAGTGATCCATCAAAGAGACCCCATGAGATATTAGCTGCATTTCTAAATACATTTTCGAAGGAGGAAGATTTAAAGTTTTTTGATAACGTCATGCGTCATCATACAAATCAATACATTTTGGAGCGACTGAAAAATAAATCTCGTGATTCCCCTGAGCAGATATTAGTCCAAGTAACTCTGCAGCATCCATTATATCCGTTGGACTATTCATTTCCATCTATTGATGAGGGGTGGATAGTTGTAAACGTTAAAAACAAACCCAAGGTGATGAAATCTACTGCAATGGTAGCTGTTGACTGTGAAATGGTTCTTTGTAAAGATGGGACTGAAGCAGTAGTTAAAGTTAGTGTGGTAGACCATAACTTGGAGGTCAAACTGAATGAATTTGTAAAACCTGACAGAGAAATTGTAGACTATAGAACAACGATCACTGGTGTCTCTTCTCAAGATCTAGAGGCAGTGACTAGCTCCTTGGCTGATATACAGAAATCCATGAAGAAGTTGTTATCAAATGGAGCCATATTAGTTGGACACAGTTTGCATAATGATCTACGTGTGCTGAAGCTTGATCATGTCAGAGTGATCGACACTTCATATATCTTCCAATCCTCGGATGGATCTATGCACAGGAGACCTTCTTTGAATAGTTTATGTCAGGCTGTTTTGGGCTATGAAGTTCGGAAAAAAGGTGCTCCACATAGTTGTCTAGATGATGCACGTGCAGCTATGAACCTTGTTCTTGCGAAGATCAAACATGGTGTTGATAAGGAATTTCCAATTTCATTGGTTCAAGATCATGTTCCAGAAACTGAGATGGCAAAACTTTTTCTTCACAAGATACCAAACACTGTAAACATAGAATCACTGCATAAAATTATTCCTGGAGAATTCGAAACAGAACTGCAGCCTTCTAAAAAGGGTCAAGGAAGACATTACTCTGCCTTAGCTGTTTTTAAAAATCCACAAGAGGCGGATGATGCCTATGAAAATGTCCAAGGAAGTCAATTGAAGGATACATATGGACGTCCACAGAAACTAGTAAAATTAGGCACGTCTGACACTCTATTTGTTCGGAAAATGGTAAGCGAAGAACCTAATGGCCGGACTCCATCTAATAAGAGGGCTTTAGAAACGGCTGAGGCAGTTGATGTTTCCAAGAAAGCAAAGATAGATAAAAAATTGAAGAGGATGGCCCAACATGCCTAG 1347 0.395 MEDKIEIADKKVLVDIVKLVQKRGLRGKLGGWKEFLNSHDRKSGARLSDPSKRPHEILAAFLNTFSKEEDLKFFDNVMRHHTNQYILERLKNKSRDSPEQILVQVTLQHPLYPLDYSFPSIDEGWIVVNVKNKPKVMKSTAMVAVDCEMVLCKDGTEAVVKVSVVDHNLEVKLNEFVKPDREIVDYRTTITGVSSQDLEAVTSSLADIQKSMKKLLSNGAILVGHSLHNDLRVLKLDHVRVIDTSYIFQSSDGSMHRRPSLNSLCQAVLGYEVRKKGAPHSCLDDARAAMNLVLAKIKHGVDKEFPISLVQDHVPETEMAKLFLHKIPNTVNIESLHKIIPGEFETELQPSKKGQGRHYSALAVFKNPQEADDAYENVQGSQLKDTYGRPQKLVKLGTSDTLFVRKMVSEEPNGRTPSNKRALETAEAVDVSKKAKIDKKLKRMAQHA 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g02227 448 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 11 310 IPR047021 GO:0004527
Spst6g02227 448 CDD REX1_like 143 294 IPR034922 -
Spst6g02227 448 Pfam Exonuclease 143 292 IPR013520 -
Spst6g02227 448 SUPERFAMILY Ribonuclease H-like 142 298 IPR012337 -
Spst6g02227 448 SMART exoiiiendus 141 302 IPR013520 -
Spst6g02227 448 Gene3D - 137 312 IPR036397 GO:0003676
Spst6g02227 448 FunFam Small RNA degrading nuclease 3 137 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g02227 Spst-Chr6 30857200 30866453 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g02227 138 273 C2H2 Transcription Factor Family AT3G27970 30.128 1.71e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g02227 K14570 - gmx:100785565 709.909