Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g02221 ATGAAATGCCTGAGAGAGATTGAGAGAGATTATGTTGCATGGAACACGATGATTGCGGGGTATGCGCAATGTGGAAGGCCAAAGGAGGCGTTGGATATGTTCCGTTTGATGCAAATGGAGGGTGTGAAACTTAATGAGGTGTCAATGATTTTGGTTTTGATTTTGTCTGCATGTACCCATATGGGTGCATTGGATCAGGGAAGATGGGTGCATGCATATGTGGAGAGGCATAAGGTTAGGATGACAATGACACTGGCAACTGCACTTGTTGACATGTATGAAAAATGTGCGAACATTGATAAGGCAATGAAAGTTTTTGGTGCAGGGCAGGCAGTGGCACTCAGAGTAACAGCAGATCGTTGTGCTTTCTATAATTGCAGGTTCCTTGGGTGGCAGGACACACTATACTTACATTATGGAAAGCAATACTTGAAAGATTGTTACATTGAAGGGAGTGTGGACTTCATTTTTGGTAATAGTACTGCACTCTTGGAACATTGTCACATCCATTGCAAGTCCGCAGGGTTTATAACTGCACAGAGCAGAAACTCTCCACAGGAAAAAACTGGTTATGTATTCCTGAGATGTGTTGTCACAGGTAATGGGGGAACTTCATATGCATATCTGGGAAGACCATGGAGACCTTTTGCAAGAGTGGTTTTTGCATTCACTTTCATGGATCAATGTATAAAGCCTGCAGGGTGGAATAATTGGGGCAAAGTGTTCGGACCAGGTTTCTGTCCATCCCAAAGAGTGAAATGGGCCAGAGAATTGAAGAATGAAGGAGCTGAGCAGCTTCTCGAGTCACACCTTCATTGA 819 0.4371 MKCLREIERDYVAWNTMIAGYAQCGRPKEALDMFRLMQMEGVKLNEVSMILVLILSACTHMGALDQGRWVHAYVERHKVRMTMTLATALVDMYEKCANIDKAMKVFGAGQAVALRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALLEHCHIHCKSAGFITAQSRNSPQEKTGYVFLRCVVTGNGGTSYAYLGRPWRPFARVVFAFTFMDQCIKPAGWNNWGKVFGPGFCPSQRVKWARELKNEGAEQLLESHLH 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g02221 272 Pfam PPR repeat 12 42 IPR002885 -
Spst6g02221 272 Gene3D - 75 271 IPR012334 -
Spst6g02221 272 NCBIfam pentatricopeptide repeat 12 46 IPR002885 -
Spst6g02221 272 Gene3D Tetratricopeptide repeat domain 1 54 IPR011990 GO:0005515
Spst6g02221 272 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 82 270 - -
Spst6g02221 272 Pfam Pectinesterase 109 242 IPR000070 GO:0030599|GO:0042545
Spst6g02221 272 ProSitePatterns Pectinesterase signature 2. 149 158 IPR033131 -
Spst6g02221 272 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 10 44 IPR002885 -
Spst6g02221 272 SUPERFAMILY Pectin lyase-like 108 260 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g02221 Spst-Chr6 30632658 30649197 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g02221 73 254 Carbohydrate Esterase AT5G49180 37.864 6.01e-39 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g02221 K01051 - gmx:100810259 324.324