Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g02213 ATGGTAACCATTGTTGCTTCTCACAGGATCTTTCCAAATCAAGAAACTCCCAAGGGTCGTTTATGGTTATCAGATAGTGACCAAGTCGGGCGTTCAGGTCACACACCCAATATCTATGTTTACGAAGCAAAACACAACGATGAGACCATTGAGAGGTTGAGGAACTCACTTGGTGAGATTTTAGTGCACTACTATCCAGTAGCTGGCAGATTGAGCTTAGCAGAAAGTGGTCGAATTGAAGTGGATTGCAATGCAAAGGGAGTGACATTGCTTGAAGCTCAAACCACAACATCATTTGCTAATTATGACTTTTCACCTTCTGAGTATGTCAAGGAACTTATTCCAAAAATTGATTACACTCAATCCATAGAAGAAATTCCTTTGTTGTTTGTGCAATTGACAAGATTCCATGGTGGTCAAGGATTTGTTATTGGAGTGGCTTTCAGTCACCCTTTGTCTGATGCGCTTGGTTACTTTCAATTCATGAATTCATGGGCAAAGCTGGGTCGCGGAGAGACACTAGAGCCACATGAATTGCCATATCTGGATAGAACAATCCTCAAACTTCAACACTCTCCTTCAACATCACCATGCTTTGATCACCCCGAGTTGAAGTCTCTACCACTTAAACTCGGATCCTCTGACATCAATGCTGAGCAAAGCAAGAAGACAAGTGCTGTGTTACTGAAGCTAACCCCACAACAAGTGGAAAATCTGAAGAAGGAGGCCAATGAAACACCCTTGAGAGAAGGGGTAAGACCTTATAGCAGATTTGAAGCTATTGCTGCTCATATATGGAGATGTGCATCTAAGGCTCGTGAACTTGAAGAGAAGCAACCAACCCTAGTTCGTTTCAACGCTAGTATCCGCAGCAGAATAATTCCTCCTCTGCCTAGGAATTACTTTGGGAATGCTTTGGCAGCAACAGTGACACCCAAATGTTATGTTGGAGAAATTATATCAAAGCCATTGAGCTATGCTGCACAGAAAGTAAGAGAAGGAATTGAAAAGCTTACAAATGAATACATAAGGTCACAATTGGAGATTGCGTTAGGTGAGGAGCAATTGGATTGCATAAGGGCTTTTTTCTCGGGACAAGGAGAGCGTAGGAATTCGGCTTTCGCAGGGAACCCGAACCTTCAAATGACAAGCTGGATGAGCATGCCAGTGTATGAAGCAGATTTTGGGTGGGGAAAGCCTGTGTATTTTGGGTTGGCATATGTGTTTCCACAAGACAGGGCAGTGATTCTTCTTGGTCCACATGGTGATGAAACCGTTATTGTCTCCATGCACTTTCAAGCCGAGCACTTGCAACTTTTCAAGAAATTCTTCTATCAGAGTACATTACAAGAAAATGGTGATCTAGGGTCAGTCAAAAGCCGACTCTAA 1389 0.4284 MVTIVASHRIFPNQETPKGRLWLSDSDQVGRSGHTPNIYVYEAKHNDETIERLRNSLGEILVHYYPVAGRLSLAESGRIEVDCNAKGVTLLEAQTTTSFANYDFSPSEYVKELIPKIDYTQSIEEIPLLFVQLTRFHGGQGFVIGVAFSHPLSDALGYFQFMNSWAKLGRGETLEPHELPYLDRTILKLQHSPSTSPCFDHPELKSLPLKLGSSDINAEQSKKTSAVLLKLTPQQVENLKKEANETPLREGVRPYSRFEAIAAHIWRCASKARELEEKQPTLVRFNASIRSRIIPPLPRNYFGNALAATVTPKCYVGEIISKPLSYAAQKVREGIEKLTNEYIRSQLEIALGEEQLDCIRAFFSGQGERRNSAFAGNPNLQMTSWMSMPVYEADFGWGKPVYFGLAYVFPQDRAVILLGPHGDETVIVSMHFQAEHLQLFKKFFYQSTLQENGDLGSVKSRL 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g02213 462 Coils Coil 335 355 - -
Spst6g02213 462 Gene3D - 1 206 IPR023213 -
Spst6g02213 462 Gene3D - 213 447 IPR023213 -
Spst6g02213 462 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 10 443 - -
Spst6g02213 462 Pfam Transferase family 1 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g02213 Spst-Chr6 30484589 30485977 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g02213 2 446 Monolignol Biosynthesis Gene Families AT5G48930 33.259 6.71e-84 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g02213 K13065 - gmx:100779814 712.605