Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g02194 ATGGAAACTGAAAAGTCAAACTTATCAAAGGCTGAAGAACTTAAACTCCTTGCAAATGAAGCTTTCAATGCTCGAAAATACTCCCAAGCCATTGATCTATATACTCAAGCAATTGAGCTGAACAGTGGAAATGCAGTTTACTATTCTAATCGTGCCTTTGCCCATCTTCGGCTTGAGGAATATGGTAGTGCAATACAAGATGCCACAAAGGCTATTGAAGTTGATCCTAAATATTCAAAGGGTTATTACAGGCGAGGTGCTGCTCATATTGGGCTGGGAAAGTTCAAGGAAGCACTGAAAGATTTTCAGCAGGTCAAGAAAATGTCTCCAAATGATCCTGATGCAACAAAGAAATTGAAGGAATGTGAAAAAGCAGTTATGAAACTTAAATTTGAAGAAGCAATTGCTGCACCTGAGTCTGAAAGGCGTTCAATAGCTGAATCCATAGATTTCCGTACAATAGGAAAGGGCCGCGATTCTTCGGTTCCAACCGAAGTGGCCATAGCAGCAGTGACAGTAGCAGTTATGGCAGCGGCGGTGATGTTGTTCAGGACATCAAAGACCACAATAGTAGTTGCAATTGTGGTTGGTTTGCTGTTGCTCCTCGGGGCTTATTGGTGGAGTGGCCACAATACTGATGTCGAGCCACAGTATTCAGGAGCAAGAATAGAGGGGGATGTTGTTACTTTGGATTTTGCGAAAAAAATGATGGAAGATTTCAAGAATCAGAAGTTCTTACATAAACGGTATGCATTTCAGATTGTATTGCAAACAAGAGAAGTTTTGCAATCTTTGCCTTCTCTTGTTGACATACATGTTCCTAATGGCAAACATTTTACTGTTTGTGGTGATGTGCATGGTCAGTACTATGATCTTTTGAATATTTTTGAGCTTAATGGGCTTCCTTCAGAAGAGAATCCGTATCTATTTAATGGTGACTTTGTGGATAGGGGATCTTTTTCATTGGAAGTTATCCTCACTTTGTTTGCATTTAAGTGCATGTCTCCATCAGGTAAACCCTAG 1023 0.4037 METEKSNLSKAEELKLLANEAFNARKYSQAIDLYTQAIELNSGNAVYYSNRAFAHLRLEEYGSAIQDATKAIEVDPKYSKGYYRRGAAHIGLGKFKEALKDFQQVKKMSPNDPDATKKLKECEKAVMKLKFEEAIAAPESERRSIAESIDFRTIGKGRDSSVPTEVAIAAVTVAVMAAAVMLFRTSKTTIVVAIVVGLLLLLGAYWWSGHNTDVEPQYSGARIEGDVVTLDFAKKMMEDFKNQKFLHKRYAFQIVLQTREVLQSLPSLVDIHVPNGKHFTVCGDVHGQYYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSLEVILTLFAFKCMSPSGKP 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g02194 340 ProSiteProfiles TPR repeat profile. 45 78 IPR019734 GO:0005515
Spst6g02194 340 Gene3D - 206 338 IPR029052 -
Spst6g02194 340 FunFam Serine/threonine-protein phosphatase 5 1 138 - -
Spst6g02194 340 Pfam Calcineurin-like phosphoesterase 278 334 IPR004843 GO:0016787
Spst6g02194 340 ProSiteProfiles TPR repeat profile. 11 44 IPR019734 GO:0005515
Spst6g02194 340 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 44 337 - -
Spst6g02194 340 Pfam Tetratricopeptide repeat 80 112 IPR001440 GO:0005515
Spst6g02194 340 Pfam PPP5 TPR repeat region 211 270 IPR013235 -
Spst6g02194 340 Gene3D Tetratricopeptide repeat domain 2 157 IPR011990 GO:0005515
Spst6g02194 340 SMART tpr_5 45 78 IPR019734 GO:0005515
Spst6g02194 340 SMART tpr_5 11 44 IPR019734 GO:0005515
Spst6g02194 340 SMART tpr_5 79 112 IPR019734 GO:0005515
Spst6g02194 340 SUPERFAMILY Metallo-dependent phosphatases 225 336 IPR029052 -
Spst6g02194 340 SUPERFAMILY TPR-like 7 137 IPR011990 GO:0005515
Spst6g02194 340 Pfam Tetratricopeptide repeat 17 78 - -
Spst6g02194 340 PRINTS Serine/threonine phosphatase family signature 308 335 IPR006186 GO:0016787
Spst6g02194 340 PRINTS Serine/threonine phosphatase family signature 278 305 IPR006186 GO:0016787
Spst6g02194 340 ProSiteProfiles TPR repeat profile. 79 112 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g02194 Spst-Chr6 30028932 30036283 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g02194 281 336 Calmodulin-binding Proteins AT5G63870 46.429 3.61e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g02194 K04460 - gmx:100820099 608.986