Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g02190 ATGGCTGCAACCTTTGCTTCCAGATGTGCCCGTGTGGGTCGTTCTCTGTTTGGTGGATTAAGCAACAGTTCCCCTGGTTTGTTTACCACATCACATGAGATGACATGCAACAATTTGTTTACTCAGCAGCAACGCACCTTCATCCAGATGAGGACTGTTCTCAAGGTTGTAGATAACTCGGGGGCTAAAAAGGTGATGTGCATACAGGCATTGAAAGGCAAGAAAGGGGCAAGATTAGGTGACACAATAATAGCATCAGTGAAGGAAGCACATCCCAATGGAAAAGTGAAGAAAGGAAAGGTTGTATATGGGGTGGTTGTGCGTGCAGCAATGCAAAAGGGGCGTTGTGATGGCAGTGAGGTCAAGTTTGATGATAATGCTGTGGTTCTTGTTGACAAGCAAGGCCAACCCATTGGAACCAGAGTTTTTGGACCAGTGCCTCATGAGCTGAGGCAAAAGAAGCATGTCAAGATCCTTACCTTGGCAGGGGAAAAGAAGGCTTTTGGGTTCGCCCTCAAACATTCTTTGCTTGCTTTCTTCTTCATCATGGGCATCCTTGGAACAATGGCAAGACATTTGGACACAATAGTGGGGCCTGGAGTGTTGCTCCTTTATCCTTTATACGCATCAATGAGGGCAATTGAGAGTCCTTCAACCTTGGATGATCAACAGTGGCTAACATATTGGATTTTATACTCCTTCATCACCCTCTTTGAGCTTTCATGCTACAAGATCCTAGCATGGTTTCCACTTTGGCCATACATGAAGCTAGTGTTTTGCCTCTGGCTGGTATTGCCAACGTTCAATGGAGCTGCTTACATATATGAGAACTATGTGAGGCAATATGTGAAGAATATAGGAAGCTTCTATGGAAATTCTAAGCATCCTGAGGACCAAAAGCAAGTTCTTCAAATGTTGAGTTTTGATGCAAGGAAAGCTGTTGAACGTTATATAGATACATATGGTTCTGAAGCCTTTGAGAGAGTGGTGAAAGCAGCTGACAGAGAAGCAAGGAGGCACTGA 1023 0.4448 MAATFASRCARVGRSLFGGLSNSSPGLFTTSHEMTCNNLFTQQQRTFIQMRTVLKVVDNSGAKKVMCIQALKGKKGARLGDTIIASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRQKKHVKILTLAGEKKAFGFALKHSLLAFFFIMGILGTMARHLDTIVGPGVLLLYPLYASMRAIESPSTLDDQQWLTYWILYSFITLFELSCYKILAWFPLWPYMKLVFCLWLVLPTFNGAAYIYENYVRQYVKNIGSFYGNSKHPEDQKQVLQMLSFDARKAVERYIDTYGSEAFERVVKAADREARRH 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g02190 340 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 48 163 IPR000218 GO:0003735|GO:0005840|GO:0006412
Spst6g02190 340 SMART Ribosomal_L14_2 47 166 IPR000218 GO:0003735|GO:0005840|GO:0006412
Spst6g02190 340 Pfam Ribosomal protein L14p/L23e 48 163 IPR000218 GO:0003735|GO:0005840|GO:0006412
Spst6g02190 340 Gene3D Ribosomal protein L14 47 164 IPR036853 GO:0003735|GO:0005840|GO:0006412
Spst6g02190 340 FunFam 50S ribosomal protein HLP, mitochondrial-like 47 165 - -
Spst6g02190 340 SUPERFAMILY Ribosomal protein L14 48 164 IPR036853 GO:0003735|GO:0005840|GO:0006412
Spst6g02190 340 ProSitePatterns Ribosomal protein L14 signature. 104 130 IPR019972 -
Spst6g02190 340 Hamap 50S ribosomal protein L14 [rplN]. 47 168 IPR000218 GO:0003735|GO:0005840|GO:0006412
Spst6g02190 340 NCBIfam 50S ribosomal protein L14 48 163 IPR005745 GO:0003735|GO:0006412|GO:0015934
Spst6g02190 340 Pfam TB2/DP1, HVA22 family 206 282 IPR004345 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g02190 Spst-Chr6 29877245 29882334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g02190 58 149 Cytoplasmic Ribosomal Protein Gene Family AT3G04400 33.673 2.66e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g02190 K02874 K17279 gmx:100819566 310.842