Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g02181 ATGGATAAACATTCTGGGGATTCTTCATCAGCACATGCTGCCGCAGGTTCAACTGAGATTCCCTCACTCAATGCTCAGAAAAAAGGGGCAAGCAGTGCATGGGGAATCCCACGAGCAAATGAGGTGTTCCATGATTCAAGTGATATCAGCTTGTTTTCTAGTTCACTGCCTGTTCTTCCACATGAAAAGTTAGATTTGACTGATTCTGAAAATAATGGCCAACCGGATGATGATAGCTTGCTCATATTAGAGAAAGTTAATAAAGAAGATGAGGGACATGATCCTTTTGATGATTTTGAAACCAATGCAATAGGGAACATGCTTCCTGATGATGAAGATGAGCTTTTAGCTGGTATTATGGATGATTTTGACCTCAGTAAATTGCCCAGCCAACTGGAGGATTTAGATGAAAATGATGTGTTTGTCAACGGGGGAGAATTTGAGATGGATTTTGAATCCCAAGAGAGTCTTAACATTGGAATGTCCAAGATAAATATATCAGATGGAGTTGCTTCAAATGGTATTGGTCACTATGCAATCCCAAATGGTGTTGGAACGGTGGCTGGGGAGCATCCCTATGGAGAGCATCCATCAAGGACACTATTTGTTCGAAACATCAACAGTAATGTCGAGGACTCTGAATTACGAACACTATTTGAGCTATATGGGGATATCAGAACTTTGTATACAGCATGCAAACATAGAGGCTTTGTGATGATATCATACTATGACATTCGAGCTGCTCGCACTGCCATGCGTGCTTTACAAAACAAGCCGTTGAGACGGAGAAAACTTGATATTCATTTTTCAATTCCTAAGGATAACCCCTCAGAAAAAGATATTAATCAAGGAACCCTTGTAGTGTTCAATTTAGATCCATCAGTCTCAAATGATGACCTTCGGCAAATATTTGGGGCTTATGGTGAGGTCAAGGAGATCAGGGAAACTCCACATAAGAGGCACCATAAATTCATTGAATTTTATGATGTTAGAGCAGCAGAGGCAGCTCTTAAAGCATTAAATCGAAGTGATATTGCTGGGAAACGCATAAAACTGGAACCTAGTCGCCCTGGTGGAGCACGTAGAAACTTGATGCAACAACTGAGTCAAGAACTGGAACAAGATGAAGCTCGAACTTTTAGACATCAAGTGGGTTCACCCCTGGCCAATTCTCCTCCTGGTAGCTGGGCACAATTTGGTAGTCCGGTTGAACACAATCCATTAGGTTCTTATAGCAAGTCCCCTGGTTTGGGTCATGCCAGTCCCATTAATACCAATCATATGTCTGGTTTGGCTGCAATTCTTTCCCCACATGCAACAACCTCTCCCAAGATTGCACCAATTGGCAAGGACCCTGGAAGGACTGCAAATCAGATGTTTGCAAACTCCGGATCAACACAAGGAGCATCTTTTCAGCATTCTATGTCCTTTCCTGAGAAAAATGTAAATGCAAGTCCAATGCCTATATCTAATTTTGGCGAATCAAGTTCAGGTGCATCAAGTATTGGAACACTGTCTGGTCCTCAGTTTCTTTGGGGAAGCCCAACTCCTTACCCCGAGACTTCGAACACTTCTGCCTGGTCTTCATCTTCTGTGGGCCTTCCATTTACATCTGGTGTCCAGAGGCAGGGTTTCCCATATACTAGTCATCGAAGTCCTTTTCTTGGCTCCCATTCCCATCACCATGTTGGGTCTGCTCCATCTGGTCTTCCACTTGATAGGCAGTTTAACTACTTCCCTGAATCACCTGAAGCTTCTCTCATGAGCCCTGTTGCTTTTGGGAATTTAAATCAAAGTGAAGGGAATTTTATGATGAACATGGGTGGTCACGCATCCATAGGAGCTGGTCTCTCAGGAAATATTGCTGAACTTAGTTCTCCTAATTTCAGAATGATGTCACTTCCTAGGCCTGGTTCCTTGTTCCATGGAAATAGTTCATATGCTGGACCAGGAGCAAATAACATTGATGTATTAGCTGGACGTGGACAAAGTAGACGGCCTGACAATGCTGGGAACCAAATGGATAGTAAAAAGCTATACCAGCTTGATCTAGACAAAATCGTCAGTGGTGAAGATGCAAGAACTACTTTAATGATTAAAAACATCCCTAACAAGTATACCTCAAAGATGCTACTTGCTGCAATTGATGAGAATCACCGGGGTACTTATGACTTTCTGTACTTGCCAATTGACTTTAAGAATAAGTGTAATGTGGGTTATGCTTTTATCAATATGGTGTCTCCTTCACACATCATCCCCTTCTATAAGGCCTTTAATGGGAAAAAGTGGGAGAAGTTCAACAGTGAAAAGGTTGCTTCACTGGCTTATGCACGGATACAAGGAAAGGCTGCACTTGTGATGCATTTCCAGAATTCAAGCTTAATGAATGAGGACAAACGATGTCGGCCAATTCTCTTTCATTCAGAGGGCCAAGATACTAGTGACCAGGAACATTTTCTGTCTAGCAATTTGAATATATGCATTCGTCAACCAGATGGATCGTATTCAGCTGACTTGTTGGAGAGCCCGAAGGGGAATTTGGATCAGAAGTTAGAGAAAGATTAA 2565 0.4226 MDKHSGDSSSAHAAAGSTEIPSLNAQKKGASSAWGIPRANEVFHDSSDISLFSSSLPVLPHEKLDLTDSENNGQPDDDSLLILEKVNKEDEGHDPFDDFETNAIGNMLPDDEDELLAGIMDDFDLSKLPSQLEDLDENDVFVNGGEFEMDFESQESLNIGMSKINISDGVASNGIGHYAIPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRTLFELYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKALNRSDIAGKRIKLEPSRPGGARRNLMQQLSQELEQDEARTFRHQVGSPLANSPPGSWAQFGSPVEHNPLGSYSKSPGLGHASPINTNHMSGLAAILSPHATTSPKIAPIGKDPGRTANQMFANSGSTQGASFQHSMSFPEKNVNASPMPISNFGESSSGASSIGTLSGPQFLWGSPTPYPETSNTSAWSSSSVGLPFTSGVQRQGFPYTSHRSPFLGSHSHHHVGSAPSGLPLDRQFNYFPESPEASLMSPVAFGNLNQSEGNFMMNMGGHASIGAGLSGNIAELSSPNFRMMSLPRPGSLFHGNSSYAGPGANNIDVLAGRGQSRRPDNAGNQMDSKKLYQLDLDKIVSGEDARTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIIPFYKAFNGKKWEKFNSEKVASLAYARIQGKAALVMHFQNSSLMNEDKRCRPILFHSEGQDTSDQEHFLSSNLNICIRQPDGSYSADLLESPKGNLDQKLEKD 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g02181 854 CDD RRM1_MEI2_like 198 274 IPR034453 -
Spst6g02181 854 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 272 IPR000504 GO:0003723
Spst6g02181 854 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 286 351 IPR000504 GO:0003723
Spst6g02181 854 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 265 IPR000504 GO:0003723
Spst6g02181 854 MobiDBLite consensus disorder prediction 10 29 - -
Spst6g02181 854 CDD RRM3_MEI2_like 697 782 IPR034454 -
Spst6g02181 854 SUPERFAMILY RNA-binding domain, RBD 696 781 IPR035979 GO:0003676
Spst6g02181 854 MobiDBLite consensus disorder prediction 456 501 - -
Spst6g02181 854 MobiDBLite consensus disorder prediction 1 31 - -
Spst6g02181 854 Gene3D - 188 282 IPR012677 -
Spst6g02181 854 SMART rrm1_1 696 772 IPR000504 GO:0003723
Spst6g02181 854 SMART rrm1_1 285 353 IPR000504 GO:0003723
Spst6g02181 854 SMART rrm1_1 200 268 IPR000504 GO:0003723
Spst6g02181 854 CDD RRM2_MEI2_like 283 353 - -
Spst6g02181 854 Pfam RNA recognition motif 2 694 790 IPR007201 -
Spst6g02181 854 FunFam MEI2-like protein 5 isoform 2 188 282 - -
Spst6g02181 854 SUPERFAMILY RNA-binding domain, RBD 196 359 IPR035979 GO:0003676
Spst6g02181 854 PANTHER RNA RECOGNITION MOTIF-CONTAINING 24 826 - -
Spst6g02181 854 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 284 357 IPR000504 GO:0003723
Spst6g02181 854 MobiDBLite consensus disorder prediction 450 501 - -
Spst6g02181 854 Gene3D - 283 381 IPR012677 -
Spst6g02181 854 FunFam Protein MEI2-like 1 283 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g02181 Spst-Chr6 29498023 29504084 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g02181 194 370 Eukaryotic Initiation Factors Gene Family AT3G16380 25.253 3.06e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g02181 - - gmx:100814765 1533.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g02181 6 29498023 29504084 Spst6g02181 6 29498023 29504084 ECH