Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g02169 ATGGTGCCCCCTCTTCTCATTACAAAATTATTTGTGCCCTTCACAAACTATCTGCTGCAACATAAACACAATGCTTTTCTTTTTATGTTCAACACATTCACCTCTGGCAGGAACAGCCACAACGGTGACACCTTTGCCGTGTCTTACCTCATCAACTTATGTGGGTTGTCCCTGGAATTGGCCAGGCAACTCTCCAAAAGGGTGAATTTGAAAACCCCAGATGGTCCAAATGCTGTTATTGACACTCTCAAGAACTACGGATTCTCCAAAACTCAGGTTGCAAAACTTGTGGAGAAGAATCCCAAGGTGCTTACTTTACAGGTGAAGAAGACCCTCTTGCCTAAACTCAAGTTCTTGCACTCTATTGGAGTTTCCAACACTCTCATGCCTAAGATCACGCTTGCAAACCCCTTTATCTTGAGGAGGAGCCTGGGAAAATGCCTAGTGCCTCGATACGAGATTATCAGGCGTATTGTTAGTGATGATTGGAAAGTTGTTAAAGTTTTGAACAAGGCCCCATATTGTTTAACATACTGTGACCTAAGGAATAACTTGGTTCCAAACATTAAGTTTTTGAGGCAGTCTGGTGTGCCTCAGGGTTCAATCCCTCTGATGATGAGCAACTTCCCCTCTGCAGCAATGGGGAAGCATTCCAAATTTTTGGAAGTAGTCAAGAGAGTTGAGAAATTTGGGTTTGATCCTAAGAAAACAGCTTTTGTCACAGCTATCCAAGTGCTTATAATGATGCGTAAAGAGGTATGGGAATCGAGATTTGAGAGTTATGCGATGTGGGGCTGGAACAGGGAAATGGTTCGTCAAGCGTTTCTGAAGTTTCCCAGTTTTATGAATATGACTGAGGAGACAGCTACGAAGAAAATGACTTTCCTAGTGAAGGATATGGGTTTGTCCTCAGTAGATATTGCTGTCTATCCTCATCTTATATCCTACAGCTTAGAGAAGAGGATTATCCCTAGATTGTCAGTAATTAAAATCTTGAAATCAAAAGGTTTGATTAAGAGTAATTTCAGTTTTGGTTCCTATATGGGCATTACGGAGGAAATATTTTTGAAGAAATTTGTCATTAGATTCCAGGAAGATTTGCCTCTCTTACTAGATGTCTACAAAGGTATGATTCAGCATGAGGATGTTATGTAG 1155 0.4104 MVPPLLITKLFVPFTNYLLQHKHNAFLFMFNTFTSGRNSHNGDTFAVSYLINLCGLSLELARQLSKRVNLKTPDGPNAVIDTLKNYGFSKTQVAKLVEKNPKVLTLQVKKTLLPKLKFLHSIGVSNTLMPKITLANPFILRRSLGKCLVPRYEIIRRIVSDDWKVVKVLNKAPYCLTYCDLRNNLVPNIKFLRQSGVPQGSIPLMMSNFPSAAMGKHSKFLEVVKRVEKFGFDPKKTAFVTAIQVLIMMRKEVWESRFESYAMWGWNREMVRQAFLKFPSFMNMTEETATKKMTFLVKDMGLSSVDIAVYPHLISYSLEKRIIPRLSVIKILKSKGLIKSNFSFGSYMGITEEIFLKKFVIRFQEDLPLLLDVYKGMIQHEDVM 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g02169 384 Gene3D Transcription termination factor 3, mitochondrial 160 367 IPR038538 -
Spst6g02169 384 Pfam mTERF 246 355 IPR003690 GO:0003690|GO:0006355
Spst6g02169 384 Pfam mTERF 80 235 IPR003690 GO:0003690|GO:0006355
Spst6g02169 384 PANTHER CGI-12 PROTEIN-RELATED 45 361 IPR003690 GO:0003690|GO:0006355
Spst6g02169 384 SMART mt_12 166 198 IPR003690 GO:0003690|GO:0006355
Spst6g02169 384 SMART mt_12 272 303 IPR003690 GO:0003690|GO:0006355
Spst6g02169 384 SMART mt_12 130 161 IPR003690 GO:0003690|GO:0006355
Spst6g02169 384 SMART mt_12 94 125 IPR003690 GO:0003690|GO:0006355
Spst6g02169 384 SMART mt_12 304 338 IPR003690 GO:0003690|GO:0006355
Spst6g02169 384 FunFam Mitochondrial transcription termination factor-like 144 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g02169 Spst-Chr6 29195531 29196685 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Spst6g02169 mTERF 1.2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g02169 K15031 - gmx:100813396 483.026