Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g02156 ATGGTTGCTAATTTTATGATTCGAACGTTAACTGCATCAATCACAGACCATAAAAGTACCCAAATTCGATTGGGTTCTCTGCTGCAACACAAACACAATGCTTTTCTTTTATTCTTCAATTCCTTCACTTCAAGCACCTCTACTGCTTCTGAATCAGAAGGAAACCACCACAAAGGTGACGCATTTACCGTGTCTTACCTCATCAACTCGTGTGGGGTATCCCCAACACTGGCCAGAAAACTCTCCCACAGGGTCAATTTGAAAACCCCAGATGGCCCAAATGCTGTGATTGATCTTCTCAGCAACTATGGGTTCTCCAAGTCCCAGCTTGCAAAACTTGTGGAGATTCATCCCACATTGCTTTCTACAAATGCTGAGAATACCCTTTTGCCTAAACTCAAGTTCTTCCGTTCTATTGGGGTTTCGGACACTGACATGCCTAAGATCCTAATTGCTAGCCGTCTTATGTTGTTCAGAAGCTTGGAAAAATGTCTCATTCCACGTTATGAGATACTAAGGAGTGTTCTTCGTGACGATGGGGAAGTTGTTAGGGCTTTGAAAAATGCCCCATTTGGTTTTATATATAGTGGCATCACGAAACACATGGTTCCGAACGTTGTGGTTCTGAGGCAATGTGGTGTGCCCCAAGCTTCCATCTCTTACCTGATGATGTATGCTGGGACTCTAGCCTACCGGGATCATTCCAAATTTGTGGAAGCTGTTAACACTGCCAAGGAATTTGGGTTTAATCCTTTGAGAACAAATTTTATTGTGGCTATTGGAATGCTTGTAACTAAGAGCAAAGAAGTGTGGGAATCAAGGTTTGAGATTTATCAGAGGTGTGGATGGAACCGCGAAATGGCCCTTCGAGCATTTAGAAAGTTTCCCAGTTTAATGAATTTTTCAGAGGCGACATTTACTGGAAAGATGAGTTTCCTAGTAAAGGATATGGGTTGGCCACCAGCAGCTATTGCTGAATATCCTCAAGTTGTAGCGTACAACCTGGAGAAGAGGATAATACCTAGATTCTCGGTAATAAAAATCTTGAAATCAAAAGGTCTTCTTCAGAACATGCACCTTAGTTCCATTATTTGCACAACTGAGGAAAAATTCTTGAAGAAATTTGTCATCAATTTTCAGAAAGCTTTGCCCCTCTTACCAGATGTCTACACAGGTGTGATCAATCATTCAAATGTAATGTAG 1203 0.4156 MVANFMIRTLTASITDHKSTQIRLGSLLQHKHNAFLLFFNSFTSSTSTASESEGNHHKGDAFTVSYLINSCGVSPTLARKLSHRVNLKTPDGPNAVIDLLSNYGFSKSQLAKLVEIHPTLLSTNAENTLLPKLKFFRSIGVSDTDMPKILIASRLMLFRSLEKCLIPRYEILRSVLRDDGEVVRALKNAPFGFIYSGITKHMVPNVVVLRQCGVPQASISYLMMYAGTLAYRDHSKFVEAVNTAKEFGFNPLRTNFIVAIGMLVTKSKEVWESRFEIYQRCGWNREMALRAFRKFPSLMNFSEATFTGKMSFLVKDMGWPPAAIAEYPQVVAYNLEKRIIPRFSVIKILKSKGLLQNMHLSSIICTTEEKFLKKFVINFQKALPLLPDVYTGVINHSNVM 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g02156 400 Pfam mTERF 264 372 IPR003690 GO:0003690|GO:0006355
Spst6g02156 400 Pfam mTERF 97 305 IPR003690 GO:0003690|GO:0006355
Spst6g02156 400 FunFam Mitochondrial transcription termination factor-like 161 383 - -
Spst6g02156 400 Gene3D Transcription termination factor 3, mitochondrial 178 383 IPR038538 -
Spst6g02156 400 PANTHER CGI-12 PROTEIN-RELATED 60 377 IPR003690 GO:0003690|GO:0006355
Spst6g02156 400 SMART mt_12 111 142 IPR003690 GO:0003690|GO:0006355
Spst6g02156 400 SMART mt_12 321 355 IPR003690 GO:0003690|GO:0006355
Spst6g02156 400 SMART mt_12 183 215 IPR003690 GO:0003690|GO:0006355
Spst6g02156 400 SMART mt_12 147 178 IPR003690 GO:0003690|GO:0006355
Spst6g02156 400 SMART mt_12 289 320 IPR003690 GO:0003690|GO:0006355
Spst6g02156 400 SMART mt_12 254 284 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g02156 Spst-Chr6 28740728 28741930 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Spst6g02156 mTERF 2.4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g02156 K15031 - gmx:100786641 559.681