Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g02075 ATGTCAAACATGGCGATACATTTATACAAAACTTCTACCCCAAGCACACGCAATGGAGTCGTAGACAGTCAAGTAAAATCCAATCCACGAAATCATTTGATCTATGGACAGCATCATTGTGGTAAAGGCCGTAATGCCAGAGGAATAATTACCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTAAAATTGATTTTCGACGGAATGAAAAAAACATATATGGTAGAATCGTAACCATAGAATATGACCCTAATCGAAATGCATCCATTTGTCTCATACACTATGGGGATGGTGAGAAAAAATATATTTTACACCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGAGCACGGCCATACATAACATAGAAATCACACTCGGAAAGGGTGGACAATTAGCTAGAGCAGCTGGTGCTGTAGCGAAACTAATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAACTGCTCGGCAACAGTCGGACAAGTGGGAAATGTTGGGGTAAACCAGAAAAATTTAGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAGCGTCCTATAGTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCGCATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAACCCGCAACTCCTTGGGGTTTTCCTGCACTTGGAAGAAGAAGTAGAAAAAGGAAGAAATATAGTGATAATTTGA 795 0.4239 MSNMAIHLYKTSTPSTRNGVVDSQVKSNPRNHLIYGQHHCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKNIYGRIVTIEYDPNRNASICLIHYGDGEKKYILHPRGAIIGDTIVSGTEVPIKMGNALPLSTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKNLGRAGSKCWLGKRPIVRGVVMNPVDHPHGGGEGRAPIGRKNPQLLGVFLHLEEEVEKGRNIVII 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g02075 264 Pfam Ribosomal Proteins L2, C-terminal domain 130 242 IPR022669 GO:0003735|GO:0005840|GO:0006412
Spst6g02075 264 FunFam 50S ribosomal protein L2, chloroplastic 4 115 - -
Spst6g02075 264 SUPERFAMILY Translation proteins SH3-like domain 130 249 IPR008991 -
Spst6g02075 264 SMART Ribosomal_L2_2 43 119 IPR002171 GO:0003735|GO:0005840|GO:0006412
Spst6g02075 264 FunFam 50S ribosomal protein L2, chloroplastic 119 192 - -
Spst6g02075 264 NCBIfam 50S ribosomal protein L2 6 243 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
Spst6g02075 264 SUPERFAMILY Nucleic acid-binding proteins 5 126 IPR012340 -
Spst6g02075 264 Gene3D Ribosomal protein L2, domain 3 193 264 IPR014726 -
Spst6g02075 264 ProSitePatterns Ribosomal protein L2 signature. 214 225 IPR022671 GO:0003735|GO:0005840|GO:0006412
Spst6g02075 264 FunFam 50S ribosomal protein L2 192 260 - -
Spst6g02075 264 Pfam Ribosomal Proteins L2, RNA binding domain 43 119 IPR022666 GO:0003735|GO:0005840|GO:0006412
Spst6g02075 264 PANTHER RIBOSOMAL PROTEIN L2 39 242 IPR002171 GO:0003735|GO:0005840|GO:0006412
Spst6g02075 264 Gene3D - 4 115 IPR012340 -
Spst6g02075 264 Gene3D - 119 192 IPR014722 -
Spst6g02075 264 PIRSF RPL2p_RPL2a_RPL8e_RPL2o 13 261 IPR002171 GO:0003735|GO:0005840|GO:0006412
Spst6g02075 264 SMART Ribosomal_L2_C_2 125 249 IPR022669 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g02075 Spst-Chr6 21319643 21321273 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g02075 54 231 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 34.171 9.48e-26 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g02075 K02886 - csin:14412467 489.189