Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g02027 ATGCCCCAGTTTATGGACGAAACTACTTACAACCTGCAACCCGTACCTATCATTCCTAACAACAAGCTTTCCCCCAAGCATAATTTGCTCAAGGTCCAACATCTTAACCTAAGCATTCCTACAATGGAACACGTAGAGATAAAGCTTAAACATTTGGCATATGGACAGAGAATTGAAGAAGCTAAACGCATAACAAGAGGGGGAGGTTCAACTGCTTTATTTCATTGCCCTGATTTTGGAAGGGATTGGAACTTGATGGAGGGCGTGGCAAGCATTAATGATGCCGCCAATGGTGAAAATGGGTTGCTGGCAATGTTTGGCGATAATGAATTTGGTGGCGATGAAAGCCGTGGCGGCGGCGGCAGCGGAAGCGGCGGTGGTAGTAGTGGTGGGGGTGGTGGCATTGTGGAGGAGGTGCTGAAGAAGGGTCCTTGGACAGCTGCAGAAGATGCTGTTCTCATGGAATATGTGACAAAACATGGTGAAGGGAATTGGAATGCTGTGCAGAGGAACACAGGGTTGAATAGGTGTGGGAAGAGTTGTAGGCTTAGGTGGGCTAACCATTTGAGGCCCAATTTGAAGAAGGGTGCATTCTCTCCTGAGGAAGAGAAGCTCATTGTTGAACTTCATTCACAGCTTGGCAACAAATGGGCCAGAATGGCTGCTCTGTTGCCTGGGAGAACAGACAATGAGATCAAGAACTATTGGAACACACGGATCAAACGTCGCCAAAGGCAAGGTCTCCCTCTCTATTCAGATGAGCAAGATCACCATCGACCCACAGCATCAACCTCTTCCCCATGCCTCACACAAACAGGATCAAACCCTGTTAACAATCTCACAAACTTTGAGTTCTTCAATCAAAACCACCAACACCAACACCAAAACCAAAACCAATACCAACAACAACAACAACCTCTATCTCCAACTGCACCTCATCATTCCCCTCTCAGTTCCCCTCTCCAACACAGACAACCCTTCACCTCTTCTTCACATCATACTTTCTTAGACCATTCACCCCTTCCACTCTCCTCCTCTTCACCCTCCCCTCTCTCTTTCACCTTCCAAAGACCAGCACCAATGCTATGCACCCCTTTTCGCTTCAAACGCTACCGTGCCTCTCCAAGCTACAACTCCCTCCCTGACCCTCCTGTCACCGCCCAATTCCCACATCTTGATGGATTCAGGTTCCCAGTTTCTTCAGGTTTCTCTCAGTTTTTTCAACCCTCTTTGTTAGAATCCGACCGAGGGGTTTCTTCTTCCTCATCCTCACCTTTCCAACCCAAGTTGGAGCTCCCTTCAAACCAGTTCTATAAACCACCCCAAGAGCAAGACATTAAGCTTGACATTGACTTCAATGATCCTTCTTTTCAAACTAGTAGTGGCTTGCTGGGGGATCTTCTCTTGGAGGCTCAGGCTTTGGCTTCGGGCCATAACTCAAAGAAACGAGGTTACTTGAGTTTGAATGAGGGAAATGATGTGTTTGATGCATGCCAAGGCTTTGAGGACTTTCCATCTAGCTCTCTTTACTGGCCTTCTTCTGCTTCAGCACCAAAACCAAAGGAAGAGGCACCTGACTTCAGCAAATTCACGAATGAGGACTTGTCATCATTGCTTACAGTGATTCCATCTTCCAACTTACAGAGTCATGAGTGGCTCAATAATGGTGTCCCAGAAGGGTCCAATGTCCAATCCTCTGGTAGTGGCATGACAGATGACAATTTTGGACTTGATATGAAGCCGATAGCTTCATTGTTTCCTCTCACCAACACCACAAACCAAAATGAAAACCAAGGGTGCTACCCTTGGGACAATTTGCCTGGTCTCTGCTAA 1833 0.4703 MPQFMDETTYNLQPVPIIPNNKLSPKHNLLKVQHLNLSIPTMEHVEIKLKHLAYGQRIEEAKRITRGGGSTALFHCPDFGRDWNLMEGVASINDAANGENGLLAMFGDNEFGGDESRGGGGSGSGGGSSGGGGGIVEEVLKKGPWTAAEDAVLMEYVTKHGEGNWNAVQRNTGLNRCGKSCRLRWANHLRPNLKKGAFSPEEEKLIVELHSQLGNKWARMAALLPGRTDNEIKNYWNTRIKRRQRQGLPLYSDEQDHHRPTASTSSPCLTQTGSNPVNNLTNFEFFNQNHQHQHQNQNQYQQQQQPLSPTAPHHSPLSSPLQHRQPFTSSSHHTFLDHSPLPLSSSSPSPLSFTFQRPAPMLCTPFRFKRYRASPSYNSLPDPPVTAQFPHLDGFRFPVSSGFSQFFQPSLLESDRGVSSSSSSPFQPKLELPSNQFYKPPQEQDIKLDIDFNDPSFQTSSGLLGDLLLEAQALASGHNSKKRGYLSLNEGNDVFDACQGFEDFPSSSLYWPSSASAPKPKEEAPDFSKFTNEDLSSLLTVIPSSNLQSHEWLNNGVPEGSNVQSSGSGMTDDNFGLDMKPIASLFPLTNTTNQNENQGCYPWDNLPGLC 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g02027 610 SUPERFAMILY Homeodomain-like 141 236 IPR009057 -
Spst6g02027 610 MobiDBLite consensus disorder prediction 113 136 - -
Spst6g02027 610 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 190 244 IPR017930 -
Spst6g02027 610 FunFam MYB-related transcription factor 141 194 - -
Spst6g02027 610 Pfam Myb-like DNA-binding domain 142 189 IPR001005 -
Spst6g02027 610 Pfam Myb-like DNA-binding domain 195 238 IPR001005 -
Spst6g02027 610 ProSiteProfiles Myb-like domain profile. 137 189 IPR001005 -
Spst6g02027 610 ProSiteProfiles Myb-like domain profile. 190 240 IPR001005 -
Spst6g02027 610 Gene3D - 141 194 - -
Spst6g02027 610 CDD SANT 197 238 IPR001005 -
Spst6g02027 610 MobiDBLite consensus disorder prediction 251 274 - -
Spst6g02027 610 SMART sant 194 242 IPR001005 -
Spst6g02027 610 SMART sant 141 191 IPR001005 -
Spst6g02027 610 FunFam Transcription factor GAMYB 197 243 - -
Spst6g02027 610 CDD SANT 144 189 IPR001005 -
Spst6g02027 610 Gene3D - 197 262 - -
Spst6g02027 610 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 122 561 - -
Spst6g02027 610 MobiDBLite consensus disorder prediction 290 350 - -
Spst6g02027 610 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 137 189 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g02027 Spst-Chr6 20468596 20477290 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g02027 135 300 MYB Transcription Factor Family AT2G32460 64.458 2.44e-68 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst6g02027 Myb_DNA-binding 5.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g02027 - - gmx:102659401 756.903