Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g02024 ATGTTTTCTCTATCAAAACCCCTCTTCGCTCCGGTTCGCCCCACCCAGCCTCCGGTTCGCTGTGGGATGCGCGAGCTCCGCCAACGAATCCACTCCGTCCAAACCACGCAAAAAATCACCGAAGCTATGAAACTCGTCGCCGCCGCTAGGGTCCGCCGCGCCCAGGAGGCAGTCGTCAACGGCCGCCCCTTCTCCTCAAACCTAGCTGCAATGCTGAACGACATCACCCAGAGCCTCCAAAACGACGACATTTCCACCCCTCTCACCGACGTCAGACCCATAAAGACCGTCGCCCTCGTCGTCATCACCGGCGACCGCGGCCTCTGCGGCGGTTTCAACAAATGGGTAATAAAAAAAGCCGTCACCCGAATCGAGGAGCTGAAGAAACTCAATCTGGGGTGCATTGTTATCAGTGTTGGCAAAAAGGGTAACTCGTTTTTCACACACAACATCGAAAAGACACACCCTTTTGTTAAAGTCGACAGCTTCATCGAAATTGGTGGTTTTCCCACCGCGAAGGAGGCTCAGGTCATTGCTGATGATGTTTTCTCATTGTTTGTTAGTGAGGAGGTTGATAAAGTTGAGCTTGTGTACACTAAGTTTGTTTCATTGGTTAGGTTTGAGCCTGTGGTTCAGACTTTGTTGCCTTTGGGTGAGATTTATGATGTGAAAGATGAGGTTTTTAGGTTGAGTTCCAAGGAGGGAAAGTTGGCTGTGGAGAGGGATGTTGTGAGGTTGAGGAAAGAGGGTGAGGTGTTTTTTCCTCTTATGGAGTTTGAGCAGGATCCTGTTCTGATTCTTGATGCCATGTTGCCTCTTTATTTAAATAGTCAAATTTTGGGGGCTTTGCAGGAGTCTGTGGCTAGTGAGCTTGCTGCTAGGATGGGGGCCATGGCTGCTGCCACCGACAATGCGGTTGAATTGAAGAAGCGGCTTTCGGTTGAATACAACCAGGAGCGGCAAGCGAAGATCACTGGGGAGTTGTTGGAGATTGTGGCTGGAGCTGACGCACTAACACCAATTGACTGA 1029 0.5053 MFSLSKPLFAPVRPTQPPVRCGMRELRQRIHSVQTTQKITEAMKLVAAARVRRAQEAVVNGRPFSSNLAAMLNDITQSLQNDDISTPLTDVRPIKTVALVVITGDRGLCGGFNKWVIKKAVTRIEELKKLNLGCIVISVGKKGNSFFTHNIEKTHPFVKVDSFIEIGGFPTAKEAQVIADDVFSLFVSEEVDKVELVYTKFVSLVRFEPVVQTLLPLGEIYDVKDEVFRLSSKEGKLAVERDVVRLRKEGEVFFPLMEFEQDPVLILDAMLPLYLNSQILGALQESVASELAARMGAMAAATDNAVELKKRLSVEYNQERQAKITGELLEIVAGADALTPID 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g02024 342 PRINTS ATP synthase gamma subunit signature 285 304 IPR000131 GO:0015986|GO:0045261|GO:0046933
Spst6g02024 342 PRINTS ATP synthase gamma subunit signature 192 209 IPR000131 GO:0015986|GO:0045261|GO:0046933
Spst6g02024 342 PRINTS ATP synthase gamma subunit signature 94 113 IPR000131 GO:0015986|GO:0045261|GO:0046933
Spst6g02024 342 PRINTS ATP synthase gamma subunit signature 316 337 IPR000131 GO:0015986|GO:0045261|GO:0046933
Spst6g02024 342 PANTHER ATP SYNTHASE GAMMA CHAIN 19 338 IPR000131 GO:0015986|GO:0045261|GO:0046933
Spst6g02024 342 Hamap ATP synthase gamma chain [atpG]. 20 338 IPR000131 GO:0015986|GO:0045261|GO:0046933
Spst6g02024 342 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 22 338 IPR035968 GO:0015986|GO:0045261|GO:0046933
Spst6g02024 342 Gene3D ATP synthase, gamma subunit, helix hairpin domain 22 88 - -
Spst6g02024 342 Gene3D - 89 218 - -
Spst6g02024 342 CDD F1-ATPase_gamma 23 335 IPR000131 GO:0015986|GO:0045261|GO:0046933
Spst6g02024 342 FunFam ATP synthase gamma chain, chloroplastic 21 88 - -
Spst6g02024 342 Gene3D ATP synthase, gamma subunit, helix hairpin domain 241 338 - -
Spst6g02024 342 ProSitePatterns ATP synthase gamma subunit signature. 324 337 IPR023632 -
Spst6g02024 342 Pfam ATP synthase 23 338 IPR000131 GO:0015986|GO:0045261|GO:0046933
Spst6g02024 342 FunFam ATP synthase gamma chain, chloroplastic 233 338 - -
Spst6g02024 342 NCBIfam ATP synthase F1 subunit gamma 23 338 IPR000131 GO:0015986|GO:0045261|GO:0046933
Spst6g02024 342 FunFam ATP synthase gamma chain 87 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g02024 Spst-Chr6 20446691 20447719 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g02024 19 338 Primary Pumps ATPases AT1G15700 66.867 3.64e-146 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g02024 K02115 - gmx:100797879 555.058