LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst6g02022	ATGCCCTCTGCTCAGGATCCATTTTACGTTGTCAAGGCCGAGATTCAAGAATCGATTGATAACCTGCAATCTACTTTTCATCAATGGGAAAACACATCCAATGCTGCAGAACAAGGACGTCTGAGGAAGGAGGTTCGTGCTGGATGCGAAAGCATAGAGTGGCAGGTGGATGAATTGGATAAAGCAATTGCTGTAGCCTCTAGAGATCCTTCTTGGTATGGAATTGATGCAGTTGAACTTGAAAGCCGAAGGACATGGACAAACGGTGCTCGATCTCAGGTTGACACAATGAAGAAAGCATTGGAGGCTGGGAAGAGCTCAAGTACCACAGGCCACGCCAGTGTAAATGGGATGCGCCAAGAACTCATGAGGCTACCAAATTCTCATCAAAGTGATACGTACAACCAGTATACTGGCCGAGATAATGATGATTTCATACAATCAGAATCAGATAGACAAATGCTTCTTATAAAGAAACAGGATGAGGAATTGGATGAGCTTAGTGAAAGTGTACGAAGAATTGGAGGTGTTGGACTTACAATACATGATGAACTCACTTCACAGGATAAGATTCTAGAGGAACTTGGTTCTGAGATGGAAAGTACAACAAATCGTCTTGATTTTGTCCAAAAAAAAGTGGGAATGGTTATGAAGAAGGCTAGTACAAAGGGTCAGATCATGATGATATGTGGTTTGCTGGCCTTGTTCATCTTCCTCTTTATCTTAGTATTCTTCACCTAG	741	0.4238	MPSAQDPFYVVKAEIQESIDNLQSTFHQWENTSNAAEQGRLRKEVRAGCESIEWQVDELDKAIAVASRDPSWYGIDAVELESRRTWTNGARSQVDTMKKALEAGKSSSTTGHASVNGMRQELMRLPNSHQSDTYNQYTGRDNDDFIQSESDRQMLLIKKQDEELDELSESVRRIGGVGLTIHDELTSQDKILEELGSEMESTTNRLDFVQKKVGMVMKKASTKGQIMMICGLLALFIFLFILVFFT	246

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst6g02022	246	CDD	SNARE_NTD_AtSYP61-like	5	102	-	-
	Spst6g02022	246	PANTHER	GOLGI SNARE BET1-RELATED	116	243	-	-
	Spst6g02022	246	FunFam	Syntaxin 10	3	104	-	-
	Spst6g02022	246	Pfam	Syntaxin 6, N-terminal	6	98	IPR015260	GO:0016020\|GO:0048193
	Spst6g02022	246	Coils	Coil	12	32	-	-
	Spst6g02022	246	CDD	SNARE_Qc	157	213	-	-
	Spst6g02022	246	Coils	Coil	192	212	-	-
	Spst6g02022	246	FunFam	syntaxin-61 isoform X1	157	218	-	-
	Spst6g02022	246	Gene3D	-	161	225	-	-
	Spst6g02022	246	SMART	tSNARE_6	149	216	IPR000727	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst6g02022	Spst-Chr6	20426035	20430173	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst6g02022	55	246	SNARE and Associated Proteins	AT1G28490	68.750	2.50e-95	276

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst6g02022	K08500		-	gmx:100787129	392.889

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