Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g02004 ATGGTGGCAGCTCTTGCTGAGCAACCCTCATCTCGTCTACTGAAGCACATCATTCGGTGCTATCTTCGCCTGTCAGATAATCCAAGGGCTTGTGATGCATTAAGAAGCTGTCTGCCAGATATGTTAAGAGATGCGACTTTCAACAGTTGCCTTCGTGAAGACCCCACAACTAGGAGGTGGTTACAGCAATTGCTTCACAATGTTGGAGTGAATCGAGTTCCTGCACTACAAGCTGGAGGAGGTTTCGATCATATGATTGTGACCTGA 267 0.4719 MVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFNSCLREDPTTRRWLQQLLHNVGVNRVPALQAGGGFDHMIVT 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g02004 88 PANTHER UNCHARACTERIZED 1 71 IPR007216 GO:0006402|GO:0030014
Spst6g02004 88 Gene3D - 1 72 IPR011989 -
Spst6g02004 88 Pfam Cell differentiation family, Rcd1-like 1 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g02004 Spst-Chr6 19871085 19871935 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Rcd1-like Spst6g02004 Rcd1 2.9e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g02004 K12606 - gmx:100784529 180.644
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g02004 6 19871085 19871935 Spst8g00893 8 7883368 7888861 PCT