Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g02003 ATGTCGAATTTGCCCCAATCACTGTCTATGGGTGCGGCCTTTGGCGGCGGGGGTGCTCCGCCGCCAACTCCGAGTGGGGCCGGGGCACAGGGCTCTGGTGCTGGAAAGGATCGGAAGATGGCATCGGCGGAGCAACTCGTACTGGAACTCAGCAACCCTGAACTCCGTGAAAATGCTCTTCTGGAACTCTCCAAGAAGAGGGAGCTATTTCAAGATCTTGCTCCTCTGTTATGGAATTCTTTCGGTACTATTGCTGCACTTTTGCAGGAAATAGTTTCAATATACCCTGTTCTTTCACCACCAAATCTTACTCCTGCACAATCAAATCGAGTGTGTAATGCTCTTGCTCTTCTTCAGTGTGTAGCATCTCACCCTGATACAAGGATGCTATTCCTCAATGCTCATATACCTTTGTATCTGTATCCCTTCCTTAATACGACAAGCAAATCGAGACCATTTGAGTACTTAAGGCTTACCAGTCTTGGTGTCATTGGTGCATTGGTGAAGGTTGATGATACAGAAGTTATAAGCTTCCTTCTTTCAACGGAAATAATTCCTCTGTGCTTGCGCACCATGGAAATGGGCAGTGAGCTATCCAAAACAGTTGAGTTTACTGATTCTTTACTTAAACTTAT 635 0.4614 MSNLPQSLSMGAAFGGGGAPPPTPSGAGAQGSGAGKDRKMASAEQLVLELSNPELRENALLELSKKRELFQDLAPLLWNSFGTIAALLQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVEFTDSLLKL 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g02003 211 Gene3D - 35 205 IPR011989 -
Spst6g02003 211 Pfam Cell differentiation family, Rcd1-like 46 202 - -
Spst6g02003 211 MobiDBLite consensus disorder prediction 1 38 - -
Spst6g02003 211 PANTHER UNCHARACTERIZED 39 203 IPR007216 GO:0006402|GO:0030014
Spst6g02003 211 SUPERFAMILY ARM repeat 48 195 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g02003 Spst-Chr6 19849093 19856526 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Rcd1-like Spst6g02003 Rcd1 1.3e-78 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g02003 K12606 - gmx:100784529 353.599