Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01997 ATGGGTGGAGGCGAGGCCGTGGAATCCAGTTCAAGGCCGGGTTTTTTCAAAGAACCGAAATATCGCGGAGTCCGGAAAAGGCCGTGGGGCCGGTTCGCCGCCGAAATCAGAGACCCTTTGAAGAAAGCAAGGGTTTGGCTCGGAACCTTCGACTCCGCGGAGGACGCGGCGCGTGCGTACGATGCGGCGGCGAGAACTCTCCGGGGACCCAAAGCAAAGACCAACTTCCCTCTCCCTCCGCAGTTCTACAACCCCGATCCGTTCTCCGACCACCGGTACTTCGCCGGTGCCGGTGATCCCTTTTACGATCACCGGCAACCAACCTCCAGCGGCATGAGCAGCACCGTCGAGTCTTTCAGCGGCCCACGCGCCGCCGTTATTAAGGCGGTGCCGGTGACCACCGCCCGGAGATACCCGAGGACGCCGCCGATCGTCCCCGAGGACTGCCGCAGCGACTGCGACTCGTCATCCTCCGTCGTGGACGACGGAGACGGCGACAACGCGGCCTCGTCCTTCCGGCGAGAACCGTTGCCGTTTGATCTAAACGCGTTGCCGTTGGAGGATGCTGACGTGGCAAACGGTAGCGTGGATAATGATATGTTCTGCACCGTTCTTTGTCTCTGA 624 0.6154 MGGGEAVESSSRPGFFKEPKYRGVRKRPWGRFAAEIRDPLKKARVWLGTFDSAEDAARAYDAAARTLRGPKAKTNFPLPPQFYNPDPFSDHRYFAGAGDPFYDHRQPTSSGMSSTVESFSGPRAAVIKAVPVTTARRYPRTPPIVPEDCRSDCDSSSSVVDDGDGDNAASSFRREPLPFDLNALPLEDADVANGSVDNDMFCTVLCL 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01997 207 SMART rav1_2 20 83 IPR001471 GO:0003700|GO:0006355
Spst6g01997 207 SUPERFAMILY DNA-binding domain 20 78 IPR016177 GO:0003677
Spst6g01997 207 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 20 182 - -
Spst6g01997 207 MobiDBLite consensus disorder prediction 138 173 - -
Spst6g01997 207 FunFam Ethylene-responsive transcription factor 2 20 78 - -
Spst6g01997 207 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Spst6g01997 207 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
Spst6g01997 207 CDD AP2 19 77 IPR001471 GO:0003700|GO:0006355
Spst6g01997 207 Pfam AP2 domain 19 69 IPR001471 GO:0003700|GO:0006355
Spst6g01997 207 Gene3D AP2/ERF domain 20 78 IPR036955 GO:0003700|GO:0006355
Spst6g01997 207 ProSiteProfiles AP2/ERF domain profile. 20 77 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01997 Spst-Chr6 19725940 19726563 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01997 14 207 AP2-EREBP Transcription Factor Family AT1G50640 59.048 1.25e-53 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst6g01997 AP2 3.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01997 K09286 - gmx:100782025 302.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g01997 6 19725940 19726563 Spst6g01997 6 19725940 19726563 ECH
Spst6g01997 6 19725940 19726563 Spst8g00906 8 7996994 7997638 PCT