Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01996 ATGGAAGGCACCAAAGAGAACCTTGAAAAGGGTGACCAAGCATTGGACCAAATGAAAAAGTGGACAGGAGTGTGTCTAACGTGGTCGTATTTGGGTGAGGCAATGGGAAGTGAAGAAGAGAGGGTTCTTGAGAACCAACTCGAACTTCAATTGCAAGAGCAAAGGGATTCCCTCTCTGCTATCGATCAAGCTATCCTCTCTGATCCAACCAACCCTGAGCTTCTCGCGGTTCATCAGGAGCTTGTCCAGGCAATTAAGGATGCAGAAGAAGGACTTTTTCACCTAAAACGGGCACGATTGTTACAGGAAGCAGATGCAGTGCTGCATAACACTAATATTTTTACTGAGGGGGAGAAAGTGGAACTCCTTGATCCCACAGATGTTGAACCAGAGCCATTGGAGGAAAACTGCCATTCTGTTGGATCTAAATGTAGATTCCGTTACAAAGATGGGCGCTGGTACAATGGGCAAGTTGTGCAGTTGGATAATTCAGTGGCAAAAGTTTCATTCCTTACTCCTACATCTGAAAATATGCTGAAGAAAAGGCAAATGGTAAGAGCGAGGTCGATTCTATTTGTTTTGGGAGGGATAGATGGTGCGGTCCAAGGTTGCATTGGTAGACATAAGAGTGGAGGCGTTGGAGTGCGAGCTCCAAGAGATGAGGGTAGAAGGACGAAATTAGATGTAAAATTGCGCAAATGTTTGAGAACCATCAACAAAGATGAAAGGAGAGATTGCCTCAACGAAAGTGCAGAGGAAGCCAAGAATGAGGTTGCACACCCTCGTGCTCAATATTGCAGTGGAGTGGGGGCAATCATGTGTGATGACATCATATCGATGATTGAGAATAAACCCAATGTAGGGGGTGTGGATAGTATAAAACTAGAATTGGGGAAAAGATTGATGCAGGAGAAGTTGAGGGGATTGAGCAGGAAGGGGTTGTTCTTCAAGTGTGGAGAAAGTGAATTAGAGAAAAGGGAGAAAAAAGTAGAAGAGGTGAAAGTGCTGCAACTATCCTTGAAAAGCACTCAAGAGGAACTAGGATTGGAGTTGTATACAACTCTAAAACACACTGTGGAGGTAGGAAATAGGGATCAACTGGTGCAAAAAAGGTGCTGCAAGGCATTGAAGTTGCAGGTCCAAGGCATTGAACTGGAACAAAATTTTTTTGATAACCTTAGGAGGTTTGGAGGTGGTATTAGGGATGGAGTGGTTATCTGCGAGGGTATTGATGCAAATATGAGTGAGAAGGTCGTGAAGGGGCCTAACAGATTTGCCAAAGTATATTCTAGAAGGCCTAAACAAGGGATGTGCAAGTTCTTTTTACAACAAAGATGTCGATTTGGTAGTAACTGTCGCCTATCACATGGAGTTGATGTTCACTTGTCCGCTCTTAAGAAATTTGTCCCTACAATATGGAAGCAGTCCCTTGTCGGGTCAAGCATATGGGCAGTCTCAACTGCAAAAGCAGGTACTTGGAGAGAAGCTGAGCTCGAGTCCTGGGACGAAAAGGCTGGAGTTGGACAAGTTGTTTTCCGAGATGATGGGAGTTCTGTGAAACTTGGTGCAGAAGAAATGGCATTGTCTGAGCATGCAGAAGTGAGTGACTCAGAGAGTGATTCCAGCTTACAGGAATCTGAGTCCAGTGACTACGAGGAGGATGAGGAATCACAAGGTTTAGGATTTCTGGAGAGTACCAAACAACAGAGAGGAGTTCAAACCGAAACTGCAAAATTTGCGACATGGGAAAACCACACTAGAGGCATAGCTTCCAAAATGATGGCTAGTATGGGGTACATTGAAGGAAAGGGTCTAGGAGTAACGGGTCAGGGAATGCTGAACCCCATACCAGTGAAGGTCTTACCACCAAAGCAGTCTTTAGATCATGCACTCGAGTCTCATAAAATGGAAGAGAACCAAGAGAAGCAATGCAAGAAGAAACGGAGCCGAGGTGGCAAAAGAAAACGCGACAAGAAATTTGCAGAAGCAAATCGTGCAGCAAAAGAGGAAGAGGAGTCGACATCAGATGTCTTTGCATTGATAAACAATCAGCTGTCAATGCACAACGATGCTTTCGGTGGTGGATCAATGAAGAAGCAGCAAAGTAAAGGTTCTGAGGAAGGTAAAAAGGTGGATAGACGGGCATTGGTTGCTTATGAGGAAGAGGTGAAGGATTTGAAGATGAGAGTTGAAAAGCTTGAGCAAATTGTGAATGCCAATAAGAAAGAGAAGGCTGTGTATGAAGCTGCCATGAGAAAATTAAATGAAACCCGCAAGGCCTTGGCTGATGCTGAAGCAGTTCATGCCTCTGCCTCAAATGCAGTTGTTAGCAAAGAAAAAGAAAAGAGATGGCTCAAGTTTTAG 2364 0.4433 MEGTKENLEKGDQALDQMKKWTGVCLTWSYLGEAMGSEEERVLENQLELQLQEQRDSLSAIDQAILSDPTNPELLAVHQELVQAIKDAEEGLFHLKRARLLQEADAVLHNTNIFTEGEKVELLDPTDVEPEPLEENCHSVGSKCRFRYKDGRWYNGQVVQLDNSVAKVSFLTPTSENMLKKRQMVRARSILFVLGGIDGAVQGCIGRHKSGGVGVRAPRDEGRRTKLDVKLRKCLRTINKDERRDCLNESAEEAKNEVAHPRAQYCSGVGAIMCDDIISMIENKPNVGGVDSIKLELGKRLMQEKLRGLSRKGLFFKCGESELEKREKKVEEVKVLQLSLKSTQEELGLELYTTLKHTVEVGNRDQLVQKRCCKALKLQVQGIELEQNFFDNLRRFGGGIRDGVVICEGIDANMSEKVVKGPNRFAKVYSRRPKQGMCKFFLQQRCRFGSNCRLSHGVDVHLSALKKFVPTIWKQSLVGSSIWAVSTAKAGTWREAELESWDEKAGVGQVVFRDDGSSVKLGAEEMALSEHAEVSDSESDSSLQESESSDYEEDEESQGLGFLESTKQQRGVQTETAKFATWENHTRGIASKMMASMGYIEGKGLGVTGQGMLNPIPVKVLPPKQSLDHALESHKMEENQEKQCKKKRSRGGKRKRDKKFAEANRAAKEEEESTSDVFALINNQLSMHNDAFGGGSMKKQQSKGSEEGKKVDRRALVAYEEEVKDLKMRVEKLEQIVNANKKEKAVYEAAMRKLNETRKALADAEAVHASASNAVVSKEKEKRWLKF 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01996 787 SMART G-patch_5 584 630 IPR000467 GO:0003676
Spst6g01996 787 Coils Coil 326 346 - -
Spst6g01996 787 MobiDBLite consensus disorder prediction 528 576 - -
Spst6g01996 787 ProSiteProfiles G-patch domain profile. 586 632 IPR000467 GO:0003676
Spst6g01996 787 Pfam CCCH-type zinc finger 437 457 IPR041367 -
Spst6g01996 787 MobiDBLite consensus disorder prediction 543 559 - -
Spst6g01996 787 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 22 432 787 - -
Spst6g01996 787 MobiDBLite consensus disorder prediction 561 576 - -
Spst6g01996 787 Gene3D - 401 469 - -
Spst6g01996 787 Pfam G-patch domain 586 628 IPR000467 GO:0003676
Spst6g01996 787 ProSiteProfiles Zinc finger C3H1-type profile. 432 459 IPR000571 GO:0046872
Spst6g01996 787 SMART c3hfinal6 432 458 IPR000571 GO:0046872
Spst6g01996 787 MobiDBLite consensus disorder prediction 689 709 - -
Spst6g01996 787 MobiDBLite consensus disorder prediction 632 674 - -
Spst6g01996 787 Coils Coil 716 767 - -
Spst6g01996 787 MobiDBLite consensus disorder prediction 656 674 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01996 Spst-Chr6 19709664 19724571 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Spst6g01996 G-patch 2.3e-11 CL0449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01996 - - gmx:100796284 548.125