Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01986 ATGATGGTGAGTTTAAAAGGACACCGTTGTGCTATGCCTTTATTCCATGTTGTGGTTCGCGGAAATTATGATACAGATGCTGGTGTTGGCATGGTTCAATGGCAAATGGCATCTTCTTCAGACTCATGGATGAAGGAATATAATGAAGCTGTAAAACTTGCTGATGATATCACTGGCATGATTTCTGAACATAGTTCGTTGCCTGCATCTGGACCAGAAACCCAGCGGCATGCATCTGCTATAAGAAGGAAGATCACGATATTAGGGACCAGGCTTGATAGTTTGCAATCTCTTTTGTCAAAGGTCCCTGCAAAAACTGAGAAGGAGATGAATCGTCGCAAGGACACGCTTTCAAATTTGAGGACAAAAGTTAACCAAATGGCCTCAACATTGAACATGTCAAACTTTGCAAATAGGGATAGCTTGCTTGGGCCAGAAATAAAGTCAGATGCAATGAGCAGAACTGTTGGCCTGGACAACAGTGGTCTAGTTGGTCTTCAACGGCAAATTATGAAAGAACAAGACGATGGCCTTGAGAAATTGGAGGAGACTGTAATCAGTACTAAACATATTGCGTTGGCAGTGAATGAAGAGCTGGATCTACACACCAGGCTCATTGATGACTTAGACGAACATGTAGATGTAACAGATTCTCGGCTGAGGCGAGTGCAAAAGAACTTAGCAGTTTTGAACAAACGTACCAAGGGTGGTTGCTCCTGCTTGTGCATGCTTTTATCAGTCATTGGTATAGTGGTTTTGATTGTTGTCATATGGCTGTTGGTCAAATATTTGTAA 795 0.4226 MMVSLKGHRCAMPLFHVVVRGNYDTDAGVGMVQWQMASSSDSWMKEYNEAVKLADDITGMISEHSSLPASGPETQRHASAIRRKITILGTRLDSLQSLLSKVPAKTEKEMNRRKDTLSNLRTKVNQMASTLNMSNFANRDSLLGPEIKSDAMSRTVGLDNSGLVGLQRQIMKEQDDGLEKLEETVISTKHIALAVNEELDLHTRLIDDLDEHVDVTDSRLRRVQKNLAVLNKRTKGGCSCLCMLLSVIGIVVLIVVIWLLVKYL 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01986 264 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 168 230 IPR000727 -
Spst6g01986 264 CDD SNARE_Qc 171 228 - -
Spst6g01986 264 Gene3D - 170 232 - -
Spst6g01986 264 PANTHER SYNTAXIN 69 253 IPR045242 -
Spst6g01986 264 SMART tSNARE_6 163 230 IPR000727 -
Spst6g01986 264 Pfam SNARE domain 205 256 IPR000727 -
Spst6g01986 264 SUPERFAMILY SNARE fusion complex 159 229 - -
Spst6g01986 264 FunFam syntaxin-51 isoform X2 170 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01986 Spst-Chr6 19571429 19574507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01986 36 264 SNARE and Associated Proteins AT1G16240 71.983 1.14e-120 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01986 K08503 - gmx:100794038 393.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g01986 6 19571429 19574507 Spst6g01986 6 19571429 19574507 ECH
Spst6g01986 6 19571429 19574507 Spst8g00931 8 8245682 8247577 PCT