Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01972 ATGCTTGACAAGCTTGGTGGTGCCTTTGTATGTACATTACTCACAGTTCTTGTGCACCCAAGCCATCATCTGGACCCCACAAGTCAAGGGAGTCGCCATGTTCTTGTTGATGACAAGGTTAGGACAGACAAGACATATCCTACTGGTTTCATGGATGTTGTTTCTATTCCCAGAACAAACGAAAGTTTCCGTCTTCTGTATGACACAAAGGGTCGCTTCCGTCTCCACTCCGTGAGGGATGAGGAGTCAAAGTTTAAGCTCTGTAAGGTTCGGTCTGTTCAATTTGGGCAAAAGGGCATACCCTATTTGAACACATACGACGGTCACACCATCCGCTATCCTGACCCACTAATCAAGGCTAATGACACCATCAAACTAGACCTGGAAAACAACAAGATCAGAGACGCATCACATAACACCACCTGA 426 0.4601 MLDKLGGAFVCTLLTVLVHPSHHLDPTSQGSRHVLVDDKVRTDKTYPTGFMDVVSIPRTNESFRLLYDTKGRFRLHSVRDEESKFKLCKVRSVQFGQKGIPYLNTYDGHTIRYPDPLIKANDTIKLDLENNKIRDASHNTT 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01972 141 Gene3D - 21 81 IPR036986 GO:0003723
Spst6g01972 141 Gene3D - 86 136 IPR038237 -
Spst6g01972 141 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 31 135 IPR000876 GO:0003735|GO:0005840|GO:0006412
Spst6g01972 141 Pfam Ribosomal family S4e 59 133 IPR013845 -
Spst6g01972 141 FunFam 40S ribosomal protein S4 86 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01972 Spst-Chr6 19298884 19299389 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01972 1 133 Cytoplasmic Ribosomal Protein Gene Family AT2G17360 66.887 2.47e-66 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01972 K02987 - pop:7478915 204.912