Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01965 ATGCTACAGAGAAAAGGTTGCAGTTTTTTTAATGAGCCTCGTCTTGTTGCCAAGAAATTCTTGGCAAGACCTCAGCATGAAGGTGTTGGGGCTGTTGTTAGAAGAAGCATAGGAAGGTTTGAGCTCAAGTACTTTGATCCCTTCCTTGTGTTGGATGAATTCTCAGTTACTGCTCCTGCTGGTTTTCCTGATCATCCCCATAGAGGCTTTGAGACAGTCACATACATGTTGCAGGGAGCTATCACGCATGAAGATTTTGAAGGACACAAGGGGACAATAGAAGCTGGTGACTTGCAATGGATGACTGCAGGAAGAGGGATCGTCCACTCAGAAATGCCTGCTGCTCAAGGAACTCAAAAGGGTTTTCAATTGTGGATCAACCTTGCTTCCAAATATAAAATGATTGAACCAAGGTATCAAGAAGTGTTGAGTAAGGACATAGCAGAAGCTGAGGAAGATGGTGTGAAGGTTAGAGTTATTGCTGGGGAAGCATTAGGGATAAAGTCTCCAATATACACAAGGACACCAACCATGTTCTTGGACTTCTCTCTCAAACCTGGAGGTCACTTGCAACAACCTATACCAAAACCTTGGAATGCTTTTGTGTATATATTGGAAGGAGAAGGTATCTTTGGAAACATGAAATCTCAGCCTTCAAACTCTCACCATATTCTTCTTCTTGGTCATGGGGATGGCCTAGAGGCATGGAACAAGTCTTCTAAACTCCTTAGGTTCATTTTGGTTGGAGCAGAACCTTTGGGGGAACCTCTAGTGCAATTTGGACCCTTTGTGATGAACACTCAAGAAGAGATTGATCAAACCATTCATGATTTCGAGAACTTTGCTAACGGATTTGAGAAAGCAAGACATTGGAGATCTGAAAACGAAATTCACTAA 897 0.4259 MLQRKGCSFFNEPRLVAKKFLARPQHEGVGAVVRRSIGRFELKYFDPFLVLDEFSVTAPAGFPDHPHRGFETVTYMLQGAITHEDFEGHKGTIEAGDLQWMTAGRGIVHSEMPAAQGTQKGFQLWINLASKYKMIEPRYQEVLSKDIAEAEEDGVKVRVIAGEALGIKSPIYTRTPTMFLDFSLKPGGHLQQPIPKPWNAFVYILEGEGIFGNMKSQPSNSHHILLLGHGDGLEAWNKSSKLLRFILVGAEPLGEPLVQFGPFVMNTQEEIDQTIHDFENFANGFEKARHWRSENEIH 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01965 298 CDD cupin_pirin_C 176 252 - -
Spst6g01965 298 FunFam pirin 27 164 - -
Spst6g01965 298 Pfam Pirin C-terminal cupin domain 179 283 IPR008778 -
Spst6g01965 298 CDD cupin_pirin_N 31 128 - -
Spst6g01965 298 Gene3D Jelly Rolls 27 279 IPR014710 -
Spst6g01965 298 Gene3D Jelly Rolls 148 253 IPR014710 -
Spst6g01965 298 PIRSF Pirin 12 292 IPR012093 -
Spst6g01965 298 Pfam Pirin 33 126 IPR003829 -
Spst6g01965 298 PANTHER PIRIN-RELATED 10 295 IPR012093 -
Spst6g01965 298 SUPERFAMILY RmlC-like cupins 14 293 IPR011051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01965 Spst-Chr6 19195860 19198930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01965 13 289 Calmodulin-binding Proteins AT3G59220 59.498 7.00e-124 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01965 K06911 - gmx:100802484 560.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g01965 6 19195860 19198930 Spst6g01965 6 19195860 19198930 ECH
Spst6g01965 6 19195860 19198930 Spst8g00938 8 8311774 8314713 PCT