Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01961 ATGCACAAGAGGCGCGCCACTGGTGGCAAGAAGAAAGCTTGGAGGAAGAAGAGAAAGTATGAGCTTGGGAGGCAGCCAGCAAACACAAAGCTATCAAGCAACAAGACGATTAGGAGGATTAGGGTTCGTGGTGGGAATGTGAAGTGGCGTGCTTTGAGGCTTGATACTGGGAACTATTCTTGGGGGAGTGAGGCTGTGACTCGCAAAACAAGGATTCTCGATGTGGTGTATAATGCATCCAACAATGAGCTTGTTCGGACTCAGACGTTGGTGAAGAGCGCCATTGTTCAGGTCGACGCAGCGCCCTTCAAGCAGTGGTATCTGCAGCATTATGGCGTTGACATCGGTCGCAAGAAGAAGAGTGCAGCTTCTGCAAAGAAGGAAGGAGAGGATGGTGAAAATGCAACTGAGGATGTGAAGAAGAGTAACCATGTTTTGAGGAAATTGGAAAAGCGACAACAGAGCCGGGTGCTTGATTCTCACATTGAAGAACAATTTGGAGGTGGCCGCCTTCTGGCTTGTATCTCATCCCGACCTGGCCAATGTGGCCGTGCTGATGGTTATATATTAGAGGGCAAAGAGCTGGAATTTTACATGAAGAAGCTTCAAAGGAAAAAGGGCAAGAGTGCTGCGTAA 636 0.4858 MHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTIRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKSAASAKKEGEDGENATEDVKKSNHVLRKLEKRQQSRVLDSHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKSAA 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01961 211 ProSitePatterns Ribosomal protein S8e signature. 4 23 IPR018283 GO:0003735|GO:0005840|GO:0006412
Spst6g01961 211 Gene3D - 19 206 - -
Spst6g01961 211 Gene3D Ribosomal protein S8e, subdomain 101 169 IPR042563 -
Spst6g01961 211 FunFam 40S ribosomal protein S8 155 208 - -
Spst6g01961 211 CDD Ribosomal_S8e_like 2 190 - -
Spst6g01961 211 Pfam Ribosomal protein S8e 2 190 IPR022309 -
Spst6g01961 211 NCBIfam ribosomal protein eS8 2 192 IPR001047 GO:0003735|GO:0005840|GO:0006412
Spst6g01961 211 PANTHER 40S RIBOSOMAL PROTEIN S8 1 208 IPR001047 GO:0003735|GO:0005840|GO:0006412
Spst6g01961 211 FunFam 40S ribosomal protein S8 25 154 - -
Spst6g01961 211 MobiDBLite consensus disorder prediction 124 146 - -
Spst6g01961 211 FunFam 40S ribosomal protein S8 102 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01961 Spst-Chr6 19178160 19180245 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01961 1 199 Cytoplasmic Ribosomal Protein Gene Family AT5G59240 84.422 1.97e-122 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01961 K02995 - gmx:100527325 387.111
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g01961 6 19178160 19180245 Spst6g01961 6 19178160 19180245 ECH