Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01957 ATGGCTAAGCTTTCCCCACTTGAAGAGCCCCTTCTAAATGGTGACTCCCGTGCAAGCAACACTTCTGATCCCAGTAAGACTAAAGGAAATGAAAATTTAACCCGATATTCAAATGCTGGATTTTTCACTATTCTCACTTTCTCGTGGATCAGCCCATTAATAGCACTAGGCAATGAGAAGACTTTAAACCACGAGGACATCCCACTTCTTGCCACTGATTGCAGTGCCTATGGGCTTTTTCAAACTTTTAGAAATAAACTAGAGTCAGAGTGTGGTAGTGTTCGAAATGTGACCACTCTTAAGCTGGCGAAGGTGTTATTCTTGTCAACAAGGCAAGGGATCCTTTTATCAGGTTTATTTGCATTCCTGTATACTTGTGCTTCTTATGTTGGACCCTTTCTTATTGACACCCTTGTTCAATACCTAAATGGAGAACACATGTTAAAAAATGAAGGATATATTTTGGCTGCGTCATTTGTTGCTGCAAAGCTTTTGGAGAGTGTTTCAGATAGGCATTGCATGTTTAGGTACCAGCAGGTTGGAGTTCAAATGCAATCAAAGTTGGTGGCAATGATCTATGCAAAAGGTTTGACACTTTCGTGCCAATCAAAGGAGGTTCATAGCACTGGGGAAATCATCAACTTAATGACTGTCGATGCTGCAAGGATTGGAGAATTTTGTTGGTACATGCATCGACCCTGGATGTGTGTTTTGCAAGTTGCTCTAGCCTTGTTAATTCTCTACAGAAGTGTAGGGGTTGCTTCAATAGCTGCTCTTGCTGCCACTGTAATTGTGATGTTGCTTAACCATCCTGTGGCATCATTGCAAGAAAAGTTTCAAGGCAAGGTAATGGAGTTCAAAGATAAAAGAATGAAGGCTACATCTGAGATTCTAAAGAATATGAGGATTCTAAAACTGCAAGCATGGGAGATGAAGTTCTTATCAAAGGTTATTGAGCTTAGGAAAACTGAGGAGATATGGCTAAAGAAATTTCTAGCTGGTTCAGCAATCGTTAGATTTCTCTTCCATAGTGCCCCAACTTTTATTGCAGTGGTTACTTTTGGTACTTGTGTTCTTATAGGCATCCCACTTGAATCAGGAAAGGTCTTATCTGCACTTGCAACATTCCGAATTCTTCAAATTCCTATCTACTCTCTTCCTGACACGATTTCATTGATTGCACAATCTAGGATTTCTCTTGAAAGGATTGCATCATTTCTTCGTTTAGAAGAGTTGCACACTGATGTAGTAGAGAAGCTTCCTCGGGGTAGTTCTGATAAGGCAATTGAATTAGTAGATGGAAATTTCTCTTGGGATTTATCTTCTTCTAATCCAACATTGAAAAACATAAATCTCACAGTTTTTCATGGTATGAGGGTTGCTGTATGTGGTACTGTTGGATCAGGCAAGTCTAGTTTACTCTCTTGTATTATAGGGGAAGTACCAAAGATATCTGGGACCGTGAAAATATGCGGAACAAAGGCTTATGTTTCTCAATCGCCATGGATACAGAGTGGCAAGATAGAAGACAACATATTATTTGGTAAAAAGATGGATAGAGAAAAGTATGAGAAGGTGCTAGAAGCATGTTCCTTGACAAAAGACCTTGAGGTTCTACCATTTGGTGATCAGACCATTGTTGGAGAGAAAGGTATCAATTTGAGTGGTGGACAGAAGCAAAGAGTGCAAATAGCCCGTGCTCTATACCAAGATGCTGATATATATCTTTTTGATGATCCATTCAGTGCGGAGTGCTTGCTTGACCTTCTAAAATCAAAAACTGTGATATACATAACTCATCAAGTAGAATTCTTACCTGATGCTGATCTGATATTGGTCATGAGAGAAGGAAGAATAACTCAGTCAGGAAAATACAATGACATTCTCAGGTCAGGGACTGATTTTATGGAACTTGTAGATGCACACAGAGCAGCTTTATCTTCATCAATTATGTCCTTAGAGAGAAGACCAACATTTAAACAATCAAGTACCACCAAGGAGAACAAAAATTCATTAACTGATTTAGAATTTGAGCAAAACGAGGAAAATAAATATGATCAAAATGATAGTATAGATGACCCAAATGAATCAAAAGGACAACTTGTTCAAGAAGAAGAACGGGAAAAGGGTAGAGTTGGGTTTAATGTATACTGGAAATACATCACAACAGCTTATGGAGGAGCTCTTGTACCCTTCATATTACTAGCTCAGACACTCACTGTGGGTTTTCAGATTGCAAGCAATTACTGGATGACTGTGGCGACTCCTGTTTCAGTAACTGGTGAACCTGATATTGGAAGCTTTACACTTATGGTTGTCTATGTCGCTTTGGCAATTGGAAGTTCAATTTTCACCCTTGCCAGATCATTTCTTGGTGTGATAGCTGGATACAAGACAGCCACTATGCTCTTCAGTAAAATGCATTTTTGTGTTTTTCGAGCACCAATATCTTTTTTTGATTCCACCCCAAGTGGACGAATCCTTAATAGAGCTTCAACAGACCAAAGTGCATTAGATGTGGACATTCCAAGCTTAGTATGGGCAATTACCCTCAATTTGCTTCAATTCTTGGGAAATATTGTTGTAATTTCTCAAGCTGTGTGGCAGGTGTTTATAGTATTGATTCCTGTGATGGCAGCATGCATATGGTACCAGAGATACTATTCTGCATCAGCGAGGGAATTGGCACGATTAGTTGGTACATGTCAAGCTCCAGTTATACAACATTTTTCAGAAACAATTTCAGGATCAACAACCATAAGAAGTTTTGAGCAAGAATCAAGATTTAATGATATAAATTTGAAATTGATAGACAGATATTCCCAGCCTAAATTATACAGTGCTACTGCAATTGAATGGTTGAATTTCAGATTGGATGTTTTATCCACTCTCATATTTGCCTTCTGTCTGGTGTTCTTGATATCTTTTCCAAACTCAATAACTACTCCTAGCATTGCTGGATTGGCTGTGACATACGGACTTAATCTAAACTCTCTACAGACTAATATAATCTGGTTCCTTTGCACTTTGGAGAACAAAATTATATCTGTTGAAAGAATACTCCAGTACACATCCCTCCCAAGCGAAGCTCCTCTTGTGATTAAAGACAACCAACCGGAAGATTCTTGGCCATCATTTGGGGAGGTTCATATCCAGGATTTACAGGTTCGATATGCTCCTCACTTGCCTATTGTTTTACGAGGTCTTACTTGTACTTTTACTGCTGGAGCAAAAACTGGTATTGTGGGAAGAACAGGAAGCGGAAAAACAACTCTAGTGCAAACACTTTTCCGACTTATTGAACCTGTTGCTGGACAAATATTGATAGATAGTATTAACATCACTTTGATCGGAATTCATGATTTGCGGTCTAGACTAAGCATTATTCCTCAAGAACCAACAATGTTTGAAGGGACTGTAAGAACCAACCTGGATCCACTGGAAGAGTACACAGATGACCAGATTTGGAAGGCTTTGGAGATGTGCCAACTTGGAGATGAAGTAAGGAAAAAAGAAGGGAAGCTTGACTCCATAGTTACTGAGAACGGAGAAAATTGGAGTATGGGTCAAAGACAATTGGTCTGTCTTGGTCGTGTTCTACTTAAGAAAAGCAAGATCTTGGTGCTTGATGAGGCTACTGCATCAGTTGATACAGCTACAGATAATATTATTCATCAAACAGTTAAGCAACATTTTGCTGAATGCACGGTCATTACCATTGCTCATAGGGTAACTTCGATCATCGATAGTGACATGGTTCTGTTTTTAAATCAAGGGTTGATTGAGGAATATGATTCACCAAAGAAACTGCTTAAGAACAAATCTTCATCTCTAGCTCTACTGGTTGAAGAATACACAAGGAGATCAAACTCTGGTTTTGGAAATTAA 3888 0.3899 MAKLSPLEEPLLNGDSRASNTSDPSKTKGNENLTRYSNAGFFTILTFSWISPLIALGNEKTLNHEDIPLLATDCSAYGLFQTFRNKLESECGSVRNVTTLKLAKVLFLSTRQGILLSGLFAFLYTCASYVGPFLIDTLVQYLNGEHMLKNEGYILAASFVAAKLLESVSDRHCMFRYQQVGVQMQSKLVAMIYAKGLTLSCQSKEVHSTGEIINLMTVDAARIGEFCWYMHRPWMCVLQVALALLILYRSVGVASIAALAATVIVMLLNHPVASLQEKFQGKVMEFKDKRMKATSEILKNMRILKLQAWEMKFLSKVIELRKTEEIWLKKFLAGSAIVRFLFHSAPTFIAVVTFGTCVLIGIPLESGKVLSALATFRILQIPIYSLPDTISLIAQSRISLERIASFLRLEELHTDVVEKLPRGSSDKAIELVDGNFSWDLSSSNPTLKNINLTVFHGMRVAVCGTVGSGKSSLLSCIIGEVPKISGTVKICGTKAYVSQSPWIQSGKIEDNILFGKKMDREKYEKVLEACSLTKDLEVLPFGDQTIVGEKGINLSGGQKQRVQIARALYQDADIYLFDDPFSAECLLDLLKSKTVIYITHQVEFLPDADLILVMREGRITQSGKYNDILRSGTDFMELVDAHRAALSSSIMSLERRPTFKQSSTTKENKNSLTDLEFEQNEENKYDQNDSIDDPNESKGQLVQEEEREKGRVGFNVYWKYITTAYGGALVPFILLAQTLTVGFQIASNYWMTVATPVSVTGEPDIGSFTLMVVYVALAIGSSIFTLARSFLGVIAGYKTATMLFSKMHFCVFRAPISFFDSTPSGRILNRASTDQSALDVDIPSLVWAITLNLLQFLGNIVVISQAVWQVFIVLIPVMAACIWYQRYYSASARELARLVGTCQAPVIQHFSETISGSTTIRSFEQESRFNDINLKLIDRYSQPKLYSATAIEWLNFRLDVLSTLIFAFCLVFLISFPNSITTPSIAGLAVTYGLNLNSLQTNIIWFLCTLENKIISVERILQYTSLPSEAPLVIKDNQPEDSWPSFGEVHIQDLQVRYAPHLPIVLRGLTCTFTAGAKTGIVGRTGSGKTTLVQTLFRLIEPVAGQILIDSINITLIGIHDLRSRLSIIPQEPTMFEGTVRTNLDPLEEYTDDQIWKALEMCQLGDEVRKKEGKLDSIVTENGENWSMGQRQLVCLGRVLLKKSKILVLDEATASVDTATDNIIHQTVKQHFAECTVITIAHRVTSIIDSDMVLFLNQGLIEEYDSPKKLLKNKSSSLALLVEEYTRRSNSGFGN 1295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01957 1295 MobiDBLite consensus disorder prediction 671 706 - -
Spst6g01957 1295 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 732 1012 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst6g01957 1295 CDD ABC_6TM_ABCC_D1 116 403 IPR044746 GO:0140359
Spst6g01957 1295 Gene3D - 407 657 IPR027417 -
Spst6g01957 1295 Gene3D - 1032 1283 IPR027417 -
Spst6g01957 1295 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 426 640 IPR027417 -
Spst6g01957 1295 ProSitePatterns ABC transporters family signature. 554 568 IPR017871 GO:0005524|GO:0016887
Spst6g01957 1295 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1049 1283 IPR003439 GO:0005524
Spst6g01957 1295 Pfam ABC transporter 1067 1214 IPR003439 GO:0005524
Spst6g01957 1295 CDD ABCC_MRP_domain2 1047 1267 - -
Spst6g01957 1295 CDD ABC_6TM_ABCC_D2 730 1024 IPR044726 GO:0140359
Spst6g01957 1295 CDD ABCC_MRP_domain1 429 618 - -
Spst6g01957 1295 SUPERFAMILY ABC transporter transmembrane region 730 1031 IPR036640 GO:0005524|GO:0016020
Spst6g01957 1295 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1041 1275 IPR027417 -
Spst6g01957 1295 FunFam ABC transporter C family member 10 98 411 - -
Spst6g01957 1295 MobiDBLite consensus disorder prediction 14 31 - -
Spst6g01957 1295 Pfam ABC transporter transmembrane region 732 975 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst6g01957 1295 Pfam ABC transporter transmembrane region 115 380 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst6g01957 1295 MobiDBLite consensus disorder prediction 657 706 - -
Spst6g01957 1295 FunFam ABC transporter C family member 5 414 650 - -
Spst6g01957 1295 Gene3D ABC transporter type 1, transmembrane domain 106 406 IPR036640 GO:0005524|GO:0016020
Spst6g01957 1295 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 37 1282 - -
Spst6g01957 1295 Pfam ABC transporter 447 581 IPR003439 GO:0005524
Spst6g01957 1295 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 429 641 IPR003439 GO:0005524
Spst6g01957 1295 SUPERFAMILY ABC transporter transmembrane region 112 411 IPR036640 GO:0005524|GO:0016020
Spst6g01957 1295 Gene3D ABC transporter type 1, transmembrane domain 694 1030 IPR036640 GO:0005524|GO:0016020
Spst6g01957 1295 MobiDBLite consensus disorder prediction 1 31 - -
Spst6g01957 1295 FunFam ABC transporter C family member 5 693 1030 - -
Spst6g01957 1295 SMART AAA_5 456 618 IPR003593 GO:0016887
Spst6g01957 1295 SMART AAA_5 1075 1260 IPR003593 GO:0016887
Spst6g01957 1295 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 115 395 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst6g01957 1295 FunFam ABC transporter C family member 3 1032 1284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01957 Spst-Chr6 19151244 19156447 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01957 429 664 Calmodulin-binding Proteins AT2G36910 29.771 3.23e-23 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01957 - K05666 gmx:106794105 2184.84