Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01952 ATGGAATCGGATCTTGGCAAGCTCTTCATTGGGGGAATATCTTGGGACACTGACGAGGAACGGCTTAAGGAATATTTTGGGAAATATGGGGAGGTGATAGAGGCTGTGATCATGAGGGATCGCGTAACAGGACGTGCTCGCGGCTTTGGTTTTGTTGTCTTTGCTGATCCTTCTGTTGCAGAAAGAGTAATCATGGATAAACACATAATTGATGGGCGCACAGTTGAAGCAAAGAAAGCTGTTCCAAGGGATGATCAGCTCAATATAAATAGGCAGTCTGGTAGTGCGCATGCATCTCCTGTTCCTGGACGCACGAAAAAAATCTTTGTTGGAGGTTTACCATCAACAATCACTGAAAGTGATTTTAAGAAGTATTTTGATCAGTTTGGTACAATTACAGATGTTGTAGTTATGTATGATCATAATACGCAGAGGCCAAGAGGTTTTGGCTTCATTACCTATGATTCTGAAGAAGCAGTGGATAGAGTTCTTTATAAAACTTTTCATGAACTCAATGGTAAGATGGTTGAAGTCAAGAGGGCAGTTCCGAAAGAGCTTTCCCCTGGTCCCAGCCGAAGCCCGTTGATAGGATATAATTATGGTTTGAATAGGGCCAGTAGCTATCTAAACAGTTATGCTCAGGGTTATAGTATGAGTCCAATAGGAGGATATGGAGTCAGGATGGACGGTAGGTTTAGTCCTCTTCCCGGTGGTAGAAGTGGATTTACTCCCTTTGGCAACACTGGTTATGGAATGGGAGTGAATTTGGATTCAGGATTGAGCCCAAGCTTTGGAGGGACTTCCAATTATGGGAGCAATTTAGGATATGGTCGACTATTTAATCCTTTCTACAGTGGCAATTCTGGCAGATATACCACTCCTATAGGCTACAGTGGGGGTAATGGGAGAAGTGATTCTCTTATGAACTCGCCTTCTCGGAATTTATGGGGAAATGGGGGCCTCAATAATGCAAGTAATCCTGTCAGCCCTAGCCCTTTCCTAGGATCTGGAAGTGGAGCTTTTGGTGTTTCAATTGGAAATAGTGGCACAGGCTGGGGTCCATCCATTCCAGCCCAGGGTGGGGGTGCTGCTTCTGGCTATGGTACTGGGAATAATGTTTATGAAAGTGGAGATAGCAGCTTTGGTCTAGGTGGGGCAGGGTATGGGAGAAACAGCAGTTCTGGTGTGACTCCATCCTCTACATTTAATGTGTCAACTGGCGGTTATGACGGATCCTACGGGGACTTATACCGCGCTGGCAGTGGTTCGGTCTACAACGACTCTGCTTGGCGTTCTGCTGTGTCTGATATTGATGGTTCTGGCTCATTTGGTTATGGTCTTGGTGGTATAGCTTCAGATGACCCAGTAAAGAGTTCTGAGGGTTATATTGGAAACTACAATGTTACTAGTAGACAACCTAATAGAGGTAAGACTTTAAGCTACATTCTTGCTTCCAAAAGAAAGTCAGAGTATTGGTTATGA 1482 0.4447 MESDLGKLFIGGISWDTDEERLKEYFGKYGEVIEAVIMRDRVTGRARGFGFVVFADPSVAERVIMDKHIIDGRTVEAKKAVPRDDQLNINRQSGSAHASPVPGRTKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKRAVPKELSPGPSRSPLIGYNYGLNRASSYLNSYAQGYSMSPIGGYGVRMDGRFSPLPGGRSGFTPFGNTGYGMGVNLDSGLSPSFGGTSNYGSNLGYGRLFNPFYSGNSGRYTTPIGYSGGNGRSDSLMNSPSRNLWGNGGLNNASNPVSPSPFLGSGSGAFGVSIGNSGTGWGPSIPAQGGGAASGYGTGNNVYESGDSSFGLGGAGYGRNSSSGVTPSSTFNVSTGGYDGSYGDLYRAGSGSVYNDSAWRSAVSDIDGSGSFGYGLGGIASDDPVKSSEGYIGNYNVTSRQPNRGKTLSYILASKRKSEYWL 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01952 493 SMART rrm1_1 107 179 IPR000504 GO:0003723
Spst6g01952 493 SMART rrm1_1 7 78 IPR000504 GO:0003723
Spst6g01952 493 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Spst6g01952 493 SUPERFAMILY RNA-binding domain, RBD 98 198 IPR035979 GO:0003676
Spst6g01952 493 Gene3D - 105 185 IPR012677 -
Spst6g01952 493 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 475 - -
Spst6g01952 493 SUPERFAMILY RNA-binding domain, RBD 4 97 IPR035979 GO:0003676
Spst6g01952 493 CDD RRM2_Hrp1p 107 184 - -
Spst6g01952 493 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Spst6g01952 493 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 166 IPR000504 GO:0003723
Spst6g01952 493 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Spst6g01952 493 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Spst6g01952 493 Gene3D - 6 87 IPR012677 -
Spst6g01952 493 FunFam Heterogeneous nuclear ribonucleoprotein 1 103 190 - -
Spst6g01952 493 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01952 Spst-Chr6 19092174 19093934 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01952 5 180 Eukaryotic Initiation Factors Gene Family AT2G23350 23.596 3.36e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01952 K14411 - gmx:100794390 915.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g01952 6 19092174 19093934 Spst6g01952 6 19092174 19093934 ECH
Spst6g01952 6 19092174 19093934 Spst8g00943 8 8340751 8343332 PCT