Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01948 ATGGACGCCGAGGAAGCCCACTCCGACAATCTGAATCGACCCAGGTCGAGACCCAATTCCGCCGCGGATGCTGCTCCGGCCGGCGGTGGTGCAAGGTACAAGCTCATGTCTCCGGCGAAGCTCCCGATCTCGCGCTCGCAGTGCGTGACGATTCCGCCGGGGCTCAGTCCCACGTCATTTCTTGAGTCGCCAGTGCTGCTCTCCAACATGAAGGTGGAACCTTCACCGACGACAGGGTCCCTTTCTATGCTTCATCAAACAGCTCATGGTTCTTTGACTTCTGCTGTATCTGCTTCATTTCCTGTAACCACTGTATGCTTCAATACCACCACTGTTGATGACCGAAAACCCAGCTTCTTTGAGTTTAAACCACATTGTAGATCAAATATGGTTCCTGCAGACCCTGACAACCATGTAAGTGAAAAATCTACTCAAATAGATGGTCAAGGAAAAGCTCAACCTTTTGATTCATCACCATTAGTAAAAAATGAGATAGCAGTCCCTTCTAATGAATTAAGTCTATCATCACCTGTTCAAATGGTTAACTCGGGAGCTAATGCCCGGGTTGAAGGTGATTTGGATGAACTGAACCCTAGAAGCAACATATCGACTGGGCTTCAAGCATCACAAGTTGACAATAGAGGTAGTGGACTTGTTGCAGCTGAGAGAGTATCTGATGATGGATACAACTGGAGAAAGTATGGGCAAAAACATGTTAAAGGAAGTGAATTTCCACGCAGTTATTACAAATGTACACATCCTAACTGTGAAGTTAAGAAACTATTTGAACGCTCTCATGAGGGGCAAATCACTGAGATAATTTACAAGGGAACACATGATCATCCAAAACCTCAACCAAACCGCCGTTACTCAACTGGAACGATCATTACTATGCAAGAAGAGAGATCTGATAAAGCTTCTTTGACTAGCCGAGATGACAGAGGATCCAATATATGTGGCCAGATGTCTCACCCAGCCGAGCCTGACAGTACTCCTGAGCTATCACCTGTAGCAACAACTGATGGTGATCCAGAGGGTACAGGATTTTTGTCAAACCGGAACAGTGATGAGGTTGATGACGATGATCCCTTCTCAAAGCGAAGAAAAATGGAGCTTGCAAATGCTGACATTACTCCTGTAGTTAAGCCTATCAGGGAGCCTCGGGTTGTTGTACAAACGCTGAGTGAGGTTGATATATTGGATGATGGTTACCGCTGGCGCAAGTATGGGCAGAAGGTGGTGAGAGGCAATCCTAACCCTAGGAGTTATTACAAATGCACAAACACGGGTTGCCCCGTTAGAAAACATGTGGAGAGGGCATCTCATGATCCGAAAGCTGTGATAACCACATATGAGGGGAAACACAATCATGATGTACCAACTGCAAGGAATAATAGTTGCCATGACATTGCAGGACCAGCAAGTGCTGCTGGTGGACAGACAAGAATTAGGCCGGAAGAAAGTGATACCATCAGCCTTGACCTTGGTATGGGAATTAGCCCTTCCGCGGAAAACACACCAAACAGTCAAGGGAGAATGATGATTTCCGAATTTGGGGACAGCCAAGCTCACACCAGCAATCCCAATTTCAAGTTTGTCCATACTTCGACGGCGCCGGTGTACTTTCTAAATAACAACTCTAACTCATATGGCTCTAGAGAAAATCCAAGTGATAGTACATCTTTAAACCATTCTGCTTATCCCTGCCCTCAGAACATGGGAAGAATACTAATGGGTCCATAA 1743 0.4601 MDAEEAHSDNLNRPRSRPNSAADAAPAGGGARYKLMSPAKLPISRSQCVTIPPGLSPTSFLESPVLLSNMKVEPSPTTGSLSMLHQTAHGSLTSAVSASFPVTTVCFNTTTVDDRKPSFFEFKPHCRSNMVPADPDNHVSEKSTQIDGQGKAQPFDSSPLVKNEIAVPSNELSLSSPVQMVNSGANARVEGDLDELNPRSNISTGLQASQVDNRGSGLVAAERVSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHEGQITEIIYKGTHDHPKPQPNRRYSTGTIITMQEERSDKASLTSRDDRGSNICGQMSHPAEPDSTPELSPVATTDGDPEGTGFLSNRNSDEVDDDDPFSKRRKMELANADITPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNTGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARNNSCHDIAGPASAAGGQTRIRPEESDTISLDLGMGISPSAENTPNSQGRMMISEFGDSQAHTSNPNFKFVHTSTAPVYFLNNNSNSYGSRENPSDSTSLNHSAYPCPQNMGRILMGP 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01948 580 MobiDBLite consensus disorder prediction 138 152 - -
Spst6g01948 580 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 134 500 IPR044810 GO:0003700
Spst6g01948 580 SUPERFAMILY WRKY DNA-binding domain 392 460 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst6g01948 580 SUPERFAMILY WRKY DNA-binding domain 223 284 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst6g01948 580 Gene3D WRKY domain 385 461 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst6g01948 580 Gene3D WRKY domain 218 285 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst6g01948 580 FunFam WRKY transcription factor 33 387 453 - -
Spst6g01948 580 MobiDBLite consensus disorder prediction 1 31 - -
Spst6g01948 580 SMART WRKY_cls 225 283 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst6g01948 580 SMART WRKY_cls 400 459 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst6g01948 580 ProSiteProfiles WRKY domain profile. 395 460 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst6g01948 580 Pfam WRKY DNA -binding domain 401 457 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst6g01948 580 Pfam WRKY DNA -binding domain 226 282 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst6g01948 580 ProSiteProfiles WRKY domain profile. 220 284 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst6g01948 580 MobiDBLite consensus disorder prediction 131 157 - -
Spst6g01948 580 FunFam WRKY transcription factor 213 285 - -
Spst6g01948 580 MobiDBLite consensus disorder prediction 300 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01948 Spst-Chr6 19031555 19036413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01948 36 580 WRKY Transcription Factor Family AT4G26640 56.498 0.0 536
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Spst6g01948 WRKY 1.7e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01948 - - gmx:100781491 1013.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g01948 6 19031555 19036413 Spst6g01948 6 19031555 19036413 ECH
Spst6g01948 6 19031555 19036413 Spst8g00947 8 8366959 8372142 PCT