Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01947 ATGCAAACATCTCAGAATCATAAAATTTCTTATGGCTCTGGTGGGTTCTATGTTGAGCCTGTGGAAAATTTGGAGTCATACTGCTTACCATCAAGTGAGAACATAGACAATTACTCTTCAGGCCAAACATTAGAACAATATTGCACTCTTGAATCTGCTTCCACAAGTAACAGTTTCCCTTACCAAAATTCTCCACCTGCTCTCAGTTTCTCGTCAAACAATAGTCCTTTGTCAAAGCTAGAGTCAAACTCATATGTGTTAAGGCCACAGAATTCCCTTGAAATTGCTAGTGGCTCACCTGAGGATGATTCTTACCTGACTCACCTTGATGACCTGACACATAAGATAAACGAGCTGGAAAGTGCTATGCTGGGAACTAATGCAGATATGCTAGATATCTATGGCCCCATAATGCCAGAAGAAGCTGATTCATTTTTGTTAGAGGCTGAGAAGTGGAAGAAAATGGATGTGGTGTCTAGAGGGGATTTGAAAGAGATGCTTTATACTTGTGCAAAGGCAATGGCTGTGAATGATATGGAGACAACTGAATGGATGATATCAGAGTCGCGTAAAATGGTTTCCATTTCAGGCAATCCAATTCAACGGTTGGGAGCATATGTTGTGGAGTCTCTTGTTGCAAGGATGGCTGCTACAGGAAGCACAATCTACAAATCCTTGAAATGTAGTGAGCCTACTGGTAATGAACTACTTTCATACATGCATGTACTCTATGAAGTTTGTCCATACTTCAAGTTTGGGTACATGTCAGCAAATGGAGCAATTGCTGAAGCACTGAAGGAGGAAAGGGAAGTCCACATAATAGACTTTCAGATTTCCCAGGGAACTCAATGGGTGAGCCTGATTCAGGCTCTTGCTCGCCGTCCCGGAGGGCCACCAAAGATCAGAATATCTGGTGTTGATGACTCCTTTTCATCTTATGCCCGGGGAGGAGGCCTTGATATTGTTGGAAAAAGGTTATCAGCACTTGCACAGTCATGTAATGTACCCTTTGAGTTCAATGCTGTGAGAGTACCTGCTTCTCAAGTGCAACTTAAAGACCTTGAACTTCGCCCTTATGAAGCTGTGGCAGTGAACTTTGCCCTTATCTTGCACCATGTGCCTGATGAAACTGTGAACAGCCACAATCATCGTGATCGGTTGTTGAGATTGGCCAAGCAATTGTCTCCTAAGGTGGTGACTCTGGTTGAGCAAGAATTTAACACCAACCACGCGCCATTCTTGCAGCGATTCGTTGAGACAATGAACTACTACTTCTCTGTTTTTGATTCTATTGATGCTGCTCTTCCAAGGGAGCACAAAGAGAGGATTAATGTGGAGCAGCATTGTTTGGCTCGTGAAGTTGTCAACTTAATAGCATGTGAAGGAGCAGAAAGAGTTGAACGTCACGAGCTTCTGAATAAGTGGAGAATGCGTTTCACAATGTCTGGATTTACGCCTTATCCACTGAACTCTGTTATTAATGCTTCAATCAAGGATCTTCTGCTGAGCTACCATGGCCACTACACTCTAGAAGAGAAAGATGGTGCACTATTTCTTGGTTGGAAGAATCAAGTTCTTATTGCCTCTTGTGCTTGGAGATGA 1602 0.4295 MQTSQNHKISYGSGGFYVEPVENLESYCLPSSENIDNYSSGQTLEQYCTLESASTSNSFPYQNSPPALSFSSNNSPLSKLESNSYVLRPQNSLEIASGSPEDDSYLTHLDDLTHKINELESAMLGTNADMLDIYGPIMPEEADSFLLEAEKWKKMDVVSRGDLKEMLYTCAKAMAVNDMETTEWMISESRKMVSISGNPIQRLGAYVVESLVARMAATGSTIYKSLKCSEPTGNELLSYMHVLYEVCPYFKFGYMSANGAIAEALKEEREVHIIDFQISQGTQWVSLIQALARRPGGPPKIRISGVDDSFSSYARGGGLDIVGKRLSALAQSCNVPFEFNAVRVPASQVQLKDLELRPYEAVAVNFALILHHVPDETVNSHNHRDRLLRLAKQLSPKVVTLVEQEFNTNHAPFLQRFVETMNYYFSVFDSIDAALPREHKERINVEQHCLAREVVNLIACEGAERVERHELLNKWRMRFTMSGFTPYPLNSVINASIKDLLLSYHGHYTLEEKDGALFLGWKNQVLIASCAWR 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01947 533 Coils Coil 109 129 - -
Spst6g01947 533 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 108 528 IPR005202 -
Spst6g01947 533 Pfam GRAS domain family 163 533 IPR005202 -
Spst6g01947 533 ProSiteProfiles GRAS family profile. 154 533 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01947 Spst-Chr6 19027846 19029447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01947 1 533 GRAS Transcription Factor Family AT1G50600 55.659 0.0 588
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Spst6g01947 GRAS 3.2e-128 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01947 - - gmx:100785400 946.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g01947 6 19027846 19029447 Spst8g00950 8 8376208 8377872 PCT