Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01945 ATGAACTCTGTTGATTGGGATCAAGAACTGAAAAAGTATCAGGATGTAATAGCTTCGGGTACCAAGAGTAGGAAAATAAAGGCCATGGTGACGTTGGCACGTTGTTCTAAGCATGCCCCTGAACATGTTTTAGCTCGCACCATACCTATTCTCACTGAAATTCTTGGTCACAATGTTTCAAATAACTCTGCTTCTTCACTTCAAGAGGCTGCTGCATATTGCTTGAAGTGCATTGCTTGCAGGGGTGGTGGTGAGTTGGCAGTTGAAATTGGTGGACATGGTGCCACTCATTCTTTGATGAGGTTGTTGCCTCATTCTGATGGAAGCATGCAGAAGGTCCTGATAAAATGTTTGCTCGTTATTGTTAGTTTTTGCAATGCAAGTAGGGCAGTTGTTGTCACCAATGGTGGGGTGGAAATGATCATTGGTTTGTTGAGTTCTTGCACCAATGATACTAGGAGGTATTTGTTGGAGATTTTGAGTGTGTTGGCATTGAGGAGGGATGTTAGGAAGGCTCTCAATAGACTAAGAGCTCTTCACTATGTTGTGGAGGCTGCTAGTTTTGGGACAATGATGTCTAGGGAAAGGGCTTGTCAAGCACTTGGGTTACTTGGAGTCACGAGACAGACTCGGCGCATACTTGTCGAATTGGGAGCAATTCCAGTGCTTGTGACATTGTTTCATGATGGAGATCACACCACGAAGCTTGTTGCTGGTAATTCTCTTGGTGTGATATCTGCTCATGTTGATTACATTAGGCTGGTTGCTGAAGCTGGGGCTATCCCTCTTTATGCTGAGCTTCTTGAAGGTCCTGATCCTTCTGGGAAAGAGATAGCTGAGGATGTGTTCTGTATATTGGCTGTTGCTGAGGCTAATGCTGTTGAAATTGCTGGTCACTTAGTGAGGATTCTGAGAGAAGGTGATGATGAAGCAAAGGCTTCTGCAGCAGATGTGATGTGGGATCTGTCGGGTTACAAACACTCAATGTCTATAGTCCGGGAATCAGGTGCGATTCCTATTCTTGTTGAGCTTTTGGAGAGTGGAAGTGAAGATGTGAAGGTGAATGTTTCTGGGGCATTTGCTCAACTTAGCTATGATGGAACTGATAGAATGGCACTTGCTGAGGCAGGGGTGATTTCAGTTCTGATTGACATGATGAATGATGTTGATGAGGTTGAGGAACTAAGGGATAATGCTGCAGAGGCTCTTGTCAATTTTTATGATGATCCATTGTATCATGATAGAGTGGCGGGTGAAATTAATATTACTTCATTCAGAAATATTCAGAATAGGTTAGTTCATATTCGGGCATCGAATGAGCATATGGCTAGATCCTTGAGAAGAATGAGTGTTGAGCAGCTCACATGGAACACAGATCTTGTATAA 1386 0.4343 MNSVDWDQELKKYQDVIASGTKSRKIKAMVTLARCSKHAPEHVLARTIPILTEILGHNVSNNSASSLQEAAAYCLKCIACRGGGELAVEIGGHGATHSLMRLLPHSDGSMQKVLIKCLLVIVSFCNASRAVVVTNGGVEMIIGLLSSCTNDTRRYLLEILSVLALRRDVRKALNRLRALHYVVEAASFGTMMSRERACQALGLLGVTRQTRRILVELGAIPVLVTLFHDGDHTTKLVAGNSLGVISAHVDYIRLVAEAGAIPLYAELLEGPDPSGKEIAEDVFCILAVAEANAVEIAGHLVRILREGDDEAKASAADVMWDLSGYKHSMSIVRESGAIPILVELLESGSEDVKVNVSGAFAQLSYDGTDRMALAEAGVISVLIDMMNDVDEVEELRDNAAEALVNFYDDPLYHDRVAGEINITSFRNIQNRLVHIRASNEHMARSLRRMSVEQLTWNTDLV 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01945 461 SUPERFAMILY ARM repeat 47 408 IPR016024 -
Spst6g01945 461 Gene3D - 239 441 IPR011989 -
Spst6g01945 461 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 336 378 IPR000225 GO:0005515
Spst6g01945 461 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN 4 ARMC4 300 414 - -
Spst6g01945 461 SMART arm_5 325 365 IPR000225 GO:0005515
Spst6g01945 461 SMART arm_5 248 288 IPR000225 GO:0005515
Spst6g01945 461 SMART arm_5 207 247 IPR000225 GO:0005515
Spst6g01945 461 SMART arm_5 125 165 IPR000225 GO:0005515
Spst6g01945 461 SMART arm_5 366 408 IPR000225 GO:0005515
Spst6g01945 461 SMART arm_5 35 80 IPR000225 GO:0005515
Spst6g01945 461 Gene3D - 13 238 IPR011989 -
Spst6g01945 461 Pfam Armadillo/beta-catenin-like repeat 332 364 IPR000225 GO:0005515
Spst6g01945 461 Coils Coil 382 402 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01945 212 406 U-box Gene Family AT1G23030 26.238 1.40e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01945 - - gmx:100819735 791.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g01945 6 19003383 19004768 Spst6g01945 6 19003383 19004768 ECH