Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01932 ATGCACAATCCCTCAGCTCGGCAACTCTCTCTCTCCCTCTCACACACATCTCCATGTTCATGGCAATATCAAGGTACCTTTCATCTTCTTCTTTATCCTCCGTTCCATCATCTCTCACCCTTCTCTCTTCCTTACCACGCTGTTTCTTCCTCCTCAGTGTTCCCACAGACCAAACCTTTACCCCGGTCCCTCTTTCTTGAGTCATCCGGGATCACCGTCACCATTTTTACTCGTAGATTTCTCTCTGATCTGTTTGGAGGCACAGATGCTAGTTTGAGGTTTTTGTGGCTGTGGTCAACTTCGAAGCCTGTTCAGTTTTGGGAGATGAGGATCATGCCTCTTTGGAGGCTTCTGAATAGAGTTCTTCTTAGGAGTGGGGAGACCAAGATGGCCGTGAACAATCGCTGTTTTGTGGAATGGAAAGAACAGTTTGTTTCACAGGAGCGTGGTAATCGTGTGGTTCACTATTACCTGAAGGATGCTGCTGGGGAATCCATCCTTGCAGTGGTGGGCACTGAGAGGAGTGTTAGGCACATGTGCTATGTTGTTGCTGAGGAGTTCCTTGAAATTTGTGGTAAGGAAGGTTCTATTCCGACTGGTTTCAAATGGCGATCTAGAAGAGAGGTGGTGGATTGGCTGACATCAACGCTATCAAAGCAGAACCTGCAGGGAGATAGAAGTGTATCACCTGCTCATAACTTGGTACAAGCTCATGAGACTACAAACGACAGTATCAATGAAATTACTGGTCTGTCTGCTCAAATTACAGATGATAAGGACTTTCCTTTGAGTAACTCCAAATTATCCAATTCAGACATTGTTTGGTCAGGAGTTGCATGGAGATGTGGCAAACAACTTAAGCATTATCCTGCTTTTTGGAGGAATGGCATCAAAATAGCCATTCAATCTTTTGTTTTTGTTATGGGCAAGGGAGAGAATCATTATATTGCTTATGTAGAGGATATGTATGAAGACAGGAGGGGGCAGAAAAAGGTCAAGGTGAGGTGGTTTCACCATAATCAGGAAGTCAAGGGTGTAGTTCCTGTGCGAAATCCTCACCCTCGAGAAGTTTTTATCACACCTTATTCTCAAGTCATTAGTGTAGAGTGCGTAGATGGTCCTGCCACAGTCTTGACTCGTGAACACTATGAAAAGTGCATGCCTTTTTTCTCGCCCACTTCAAGGGACAGAATACATTTGTGCTTTAGGCAATTTAGAAGCAATAAAGTAAAGCCCTTTGACTTGAGTAAACTGCGTGGCTACATTGCTCAACCAATTCTTTCTTGCTTGCACCTTGATTCAATTCAGAACCCTGGGAGCCTTGCAGGAGAAGATGAAGAGTTGAGTGCAGGTGATGATCTGAAGGTAGGAGCCAAGAGGAGCAGAAGTGATAAGGTGTCTCCAGAGTCTTGGATAAGTCGACAGGGAGTTAGAAAGTTGATTAGAAGTAACCAAATGATGGTATACAAAACTTTCCAGATTGCAAATTATGCAAGATCAGAAAGGAGATTGCTTTCTCAGAAGCAGGACGAGTGTCAACCTTGGTTTAACTACACATACAAGGTTGATGACAAGATTGAGTTGCTTTGTCAAGATAGTGGCATCAGAGGCTGCTGGTTCAGGTGTACAGTTGTTCAGGTAGCCCGGAAACAGTTGAAAGTCCAATATGAAGATGTCCAGGATGAAGATGGAAGTGGAAATCTGGAGGAATGGATCCCTGCTTTCAAGTTGGCCAGGCCTGATAAACTAGGGATGAGGCATTCTGGCCGGCCCACCATCAGGCCTACTCCAACTCATGAGGAACAAGAACTGACTGTTGAGGTTGGAAATGCAGTTGATGCATGGTGGAGTGATGGTTGGTGGGAGGGAGTTGTAACTAGAATTGATGACTGTGGTGATGATAATGTTCAAGTATACTTTCCAGGAGAATGCCTGCTGATGAAAGTGAGCAAGAAGGATTTAAGAATATCTAGAGATTGGTTAGGGGACAGTTGGATTAACATTAAGCCAAAACCTGAAATAACTCCAACTATACTCACAGCTAATGATAGCTATAACACAAAGCTTTCCGTGTCCTCAACTATCGATAAAGTTGGAGACACTGTTGGTTTTACTAATTCATGTCATGGTGATCCTATTAGTAAGAAGTGTGATGAACAGGCTATTGAAGACAAGAAACATGTGTCTTGTGATGGCTTCACTGAAGAAGGGATCTGTGTCCCAGATAATAAACCTTCTTCAGAAAAAAGTATCGAAGCCAATAATATTGAGATACATGGCTGTTGTGACGATGAATATAATGGCGATGATCATGATAATGTTAACAAAAATGATGATAGTAACAAGAATGGTGATAATAATGAGAATAAAGATATCAAGGTATCTGGAACTTCTGGATCAGAGCTCATGGAAGTGGCTGTATAA 2424 0.4295 MHNPSARQLSLSLSHTSPCSWQYQGTFHLLLYPPFHHLSPFSLPYHAVSSSSVFPQTKPLPRSLFLESSGITVTIFTRRFLSDLFGGTDASLRFLWLWSTSKPVQFWEMRIMPLWRLLNRVLLRSGETKMAVNNRCFVEWKEQFVSQERGNRVVHYYLKDAAGESILAVVGTERSVRHMCYVVAEEFLEICGKEGSIPTGFKWRSRREVVDWLTSTLSKQNLQGDRSVSPAHNLVQAHETTNDSINEITGLSAQITDDKDFPLSNSKLSNSDIVWSGVAWRCGKQLKHYPAFWRNGIKIAIQSFVFVMGKGENHYIAYVEDMYEDRRGQKKVKVRWFHHNQEVKGVVPVRNPHPREVFITPYSQVISVECVDGPATVLTREHYEKCMPFFSPTSRDRIHLCFRQFRSNKVKPFDLSKLRGYIAQPILSCLHLDSIQNPGSLAGEDEELSAGDDLKVGAKRSRSDKVSPESWISRQGVRKLIRSNQMMVYKTFQIANYARSERRLLSQKQDECQPWFNYTYKVDDKIELLCQDSGIRGCWFRCTVVQVARKQLKVQYEDVQDEDGSGNLEEWIPAFKLARPDKLGMRHSGRPTIRPTPTHEEQELTVEVGNAVDAWWSDGWWEGVVTRIDDCGDDNVQVYFPGECLLMKVSKKDLRISRDWLGDSWINIKPKPEITPTILTANDSYNTKLSVSSTIDKVGDTVGFTNSCHGDPISKKCDEQAIEDKKHVSCDGFTEEGICVPDNKPSSEKSIEANNIEIHGCCDDEYNGDDHDNVNKNDDSNKNGDNNENKDIKVSGTSGSELMEVAV 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01932 807 Pfam BAH domain 300 405 IPR001025 GO:0003682
Spst6g01932 807 Pfam Agenet domain 523 597 IPR008395 -
Spst6g01932 807 Gene3D - 265 417 IPR043151 -
Spst6g01932 807 CDD Tudor_Agenet_AtDUF_rpt1_3 520 580 - -
Spst6g01932 807 ProSiteProfiles BAH domain profile. 297 416 IPR001025 GO:0003682
Spst6g01932 807 CDD BAH_plant_1 292 421 - -
Spst6g01932 807 MobiDBLite consensus disorder prediction 770 807 - -
Spst6g01932 807 SMART agenet_At_2 518 583 IPR014002 -
Spst6g01932 807 SMART agenet_At_2 604 662 IPR014002 -
Spst6g01932 807 MobiDBLite consensus disorder prediction 770 789 - -
Spst6g01932 807 SMART BAH_4 297 416 IPR001025 GO:0003682
Spst6g01932 807 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 518 755 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01932 Spst-Chr6 18749366 18755726 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01932 532 660 PHD Transcription Factor Family AT5G58610 28.571 2.37e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01932 - - gmx:100306240 1152.89