LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst6g01910	ATGGGAACCTACGTGGAAGAAAGCTTCTCAGGGGAGGAGGAACATGTCTTTCGAAGTCAATATCCACCTGTCCCTATCCCTGACAAGGTGACTTTGCCAGAATTTGTGCTCCAAAATGCTGAACTTTATGCTGACAAGGTTGCATTTGTGGATGCTGTGACTGGAAAAGGGGTGACTTACAGTGAGGTGGTGAGGGGTGTGCAGAGGTTTTCAAAGGCCTTAAGATCTCTTGGTTTGAGGAAAGGGCATGTTGTGATTGTAGTGCTTCCAAATGTGGTAGAATATGGCATTGTTGCTTTGGGGATAATGGCTGCTGGTGGGGTGTTCTCAGGGGCAAATCCAACTTCTCATGTGTCAGAAATTAAGAAACAGGCAGAGTCTGCAGATGCCAAATTAATTGTCACAAATACCACAACCTTTGAAAAGGTGAAGGGTCTAGAACTACCTATTATAGTGGTAGGAGATGAAGTTGTTGAAGGTGGGATGAATTGGAAGAAGTTGCTTGCAGCAGCAGACAGGGCAGGTGATGATTTTGCAAAGGAGGCTATTCAGCAGAATGATCTTTGTGCCATGCCATTCTCATCAGGCACCACAGGAATGTCAAAGGGTGTGATGCTCACTCATAGAAATCTGGTGGCTAATCTTTGCTCTACACTCTTCAGTGTGACTAGGGAAATGGAGGGCCAGGTCACCACACTAGGCTTGATTCCATTCTTTCACATCTATGGCATAGTAGGAATATGTTGTGCCACTCTTAGGACCAAAGGGAAAGTTGTGGTTATGGGAAGGTTTGACTTGAAAATGTTTCTCAATGCCTTGATCACACATGAGATCACCTTTGCAGCCATTGTGCCCCCTATCATTCTCAGCTTGGTCAAAAATCCCATAGTAGATGAATTTGATCTCACCAAGCTGAAACTGCAGGCCATTATGACTGCAGCAGCACCACTTGCACCAGAACTCCTTAATGCTTTTGAACGTAAATTCCCTGGCGTTGCTGTCCAAGAGGCATATGGACTTACTGAGCATAGCTGCATCACACTCACTGATGCAGAGAAAGGATTGGGAAGTCCTCATAAAAATTCAGTGGGCTTCGTCCTCCCAAATTTGGAAGTCAAGTTTGTTGATCCTGACACTGGTCGATCCCTTCCCAGGAACACACCTGGGGAACTTTGTGTAAGAAGCCAATGTGTTATGCAAGGTTACTATAAACAGGTGGATGAGACTGCACAAACCATCGACAGGAATGGATGGCTTCACACAGGTGACGTAGGATTCATAGATGATGAAGACAGTGTCTTTATCATTGATCGTATCAAGGAGTTGATTAAATACAAAGGCTTCCAAGTTGCTCCTGCAGAGTTAGAGGCCATTTTGCTGAGTCATTCATCAGTTGAAGATGCAGCTGTAGTGCCATTGCCAGATGAAGAGGCAGGGGAAATCCCTGCTGCAAGTGTAGTTTTGAGCTCTGGTGCAAAAGAGAGTGAAGAGGACATCATGAACTATGTTGCCAACAATGTTGCACATTACAAGAAAGTGAGAGTGGTGCACTTTGAGGAAACCATACCAAAGTCACCCTCTGGGAAAATAATGAGGAGGCTCATTAAAGAGAAGATGGTTGAAAAAATAAAGACAAGTTCCTTAACAAAATCTAAGAATGTTTAA	1665	0.4426	MGTYVEESFSGEEEHVFRSQYPPVPIPDKVTLPEFVLQNAELYADKVAFVDAVTGKGVTYSEVVRGVQRFSKALRSLGLRKGHVVIVVLPNVVEYGIVALGIMAAGGVFSGANPTSHVSEIKKQAESADAKLIVTNTTTFEKVKGLELPIIVVGDEVVEGGMNWKKLLAAADRAGDDFAKEAIQQNDLCAMPFSSGTTGMSKGVMLTHRNLVANLCSTLFSVTREMEGQVTTLGLIPFFHIYGIVGICCATLRTKGKVVVMGRFDLKMFLNALITHEITFAAIVPPIILSLVKNPIVDEFDLTKLKLQAIMTAAAPLAPELLNAFERKFPGVAVQEAYGLTEHSCITLTDAEKGLGSPHKNSVGFVLPNLEVKFVDPDTGRSLPRNTPGELCVRSQCVMQGYYKQVDETAQTIDRNGWLHTGDVGFIDDEDSVFIIDRIKELIKYKGFQVAPAELEAILLSHSSVEDAAVVPLPDEEAGEIPAASVVLSSGAKESEEDIMNYVANNVAHYKKVRVVHFEETIPKSPSGKIMRRLIKEKMVEKIKTSSLTKSKNV	554

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst6g01910	554	PANTHER	LONG-CHAIN-FATTY-ACID--COA LIGASE	12	538	-	-
	Spst6g01910	554	ProSitePatterns	Putative AMP-binding domain signature.	191	202	IPR020845	-
	Spst6g01910	554	FunFam	Long-chain-fatty-acid--CoA ligase FadD	18	440	-	-
	Spst6g01910	554	CDD	4CL	26	533	-	-
	Spst6g01910	554	Gene3D	-	441	544	IPR045851	-
	Spst6g01910	554	Gene3D	-	14	440	IPR042099	-
	Spst6g01910	554	Pfam	AMP-binding enzyme C-terminal domain	454	529	IPR025110	-
	Spst6g01910	554	SUPERFAMILY	Acetyl-CoA synthetase-like	20	542	-	-
	Spst6g01910	554	Pfam	AMP-binding enzyme	38	445	IPR000873	-
	Spst6g01910	554	FunFam	4-coumarate--CoA ligase 2	441	542	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst6g01910	Spst-Chr6	18253643	18256920	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst6g01910	12	540	Monolignol Biosynthesis Gene Families	AT1G62940	72.881	0.0	794

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst6g01910	K01904		-	gmx:100811418	976.467

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