Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01905 ATGTCTCTTGGGTATGCCGAGAAGCTTTCCTACATAGAAGATGTGGGCAACGTTGGAATGGTCGAATACTTCGACCCATCTAACGTTTTGCGAGAGAAAATAGATCAACTTGCTATCATGATTAAAAAGAGTAAGCATCTAGTGGTGTTTACAGGTGCAGGAATATCAACTTCTTGTGGCATACCTGATTTTCGAGGTCCCAAGGGAATTTGGACACTTCAGCGTGAAGGTAAAGCCTTGCCTGAAGCATCACTTCCATTTCATCGTGCAGCGCCAAGCTTGACACACATGGCTCTGGTTGAATTAGAGAAGGCTGGCATTTTGAAGTTTGTCATCAGTCAGAATGTTGATGGTCTCCATCTTCGATCCGGAATACCAAGGGAGAAACTAGCTGAACTGCATGGGAATTCCTTCATGGAGACATGCCCTTCTTGTGGAGAAGAGTACTTTCGTGATTTTGAGGTAGAAACTATTGGTTTAAAGGAAACATCAAGGCGTTGTACAGTTGCCAAATGTGGGACAAGACTTAAGGATACTGTCCTTGACTGGGAGTCAAGTGTTGATCATGCTGATTGGAGGAATAGTGAATTGCTAGTTGTTGATGCATTGCCTCCAAAGGAGATGAATCCTGCTGAGAAGCACTGTAAACAGGCAGATATAGTGTTATGCTTGGGTACAAGTTTACAAATAACTCCAGCGTGCAACTTGCCTCTGAAAGCACTTCGTGGTGGGGGTAAAGTCGTTATTGTAAATCTCCAGAAAACTCCAAAGGACAAAAAAGCCAGTTTAGTCATACATGGGTTTGTAGATAAGGTAATTGCGGGTGTCATGGACAAGCTTAATATGCAGATTCCTCCATTCGTCAGGATTGATCTTTTCCAAATTGTTCTAGTGCAAGCTTTGAGCAACGATAAAAGATATGTGAACTGGACTCTCCAGATTGCAAGTGCTCATGGACAGAGAGCGGCATTGCCTTTCATCGAGTCTGTTGAGGTCTCCTTCTTGGACAGGGAAGATTACAAAGCAGCCATTCTGGATAAGCAACCATTTAGGCTTAAAAGGAGAACAGCATATAACAAAGCATTTGAAATGGTTCTGAAACTCAACTTCAGTGATGGCTGTGGTTGCTCATCCCTTGAAATTGATGTCCCGGTTGATTTTAAGGTTTCAACTGACTGCTTTGACTTTGATAAGGACTACATATTCCAAAAGCTGAGAGACAAGGCAGTTCTTGAATCAAGATGTGGTCAGAATGGTGTTATCGAGAGAAAGACCATCTTGACACCTAGAAGTGATGTCACTACCTATGCCATTGTGACCAATGTTGTTCAGTACAGCAAAACATGTAAAGCAGCCCTCGATTCTCTAAGTAATGGTGATCTTAAAAAAAGAAAAGCTAGTGTGACTGGAAGAAAAAAGAAGTTGTGTGTTTTCAAAGCTATGGAGCATGGAGATTCTTTCTTTCACTATGATCAACATGGGAAATCTAGTTCTGGTTTAGCAATTCCTTTGCAGCAAGCAAACACAGAAATTGCAGCAGCAATAAACTCAAATGGAGGTTCAAACCCTAATTTGATTGTGAGAGATAAGAGCAAGATGCCAATCACAAATGTGACAAAAATCATGAGAAAGATTCTTCCAAATAATGCAAAAGTTTCAGATGGAGCCAAAGAAATGATTCAACAGAGTGCTACAAACTACATCACCTTTGTCACTAGAAAAGCCAAGGAGAGATGCCAAAGTGAGTATAGAAAGATTATGAATGCAGATGACTTGTTATGGGCCATAGGAAATGTGGGCTTTGATGACTATATTGGGCCTCTCACTACTTTTCTCCAACGTTGTCGCTCCATTGAAGGAGGTATTAGTGGGCCTAGTTTTGGGCCTGAGCCCACCATGGAGATTCCTCACCCTCCTTTACCACCACCACCAGTTTCTTCATCTGGGTCAGATTTTTCCATGCACCAAAACACAGATCCTGAAATGTTTGACTCAAATGGTGTTAGTGGGTACCTAGATGCTGTTGGTTCTTCAAATAATGCTTTCATCAACTTTGATCCTTTCTCTCTCTTCCAACAGGATCAGCTCTGA 2091 0.418 MSLGYAEKLSYIEDVGNVGMVEYFDPSNVLREKIDQLAIMIKKSKHLVVFTGAGISTSCGIPDFRGPKGIWTLQREGKALPEASLPFHRAAPSLTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMETCPSCGEEYFRDFEVETIGLKETSRRCTVAKCGTRLKDTVLDWESSVDHADWRNSELLVVDALPPKEMNPAEKHCKQADIVLCLGTSLQITPACNLPLKALRGGGKVVIVNLQKTPKDKKASLVIHGFVDKVIAGVMDKLNMQIPPFVRIDLFQIVLVQALSNDKRYVNWTLQIASAHGQRAALPFIESVEVSFLDREDYKAAILDKQPFRLKRRTAYNKAFEMVLKLNFSDGCGCSSLEIDVPVDFKVSTDCFDFDKDYIFQKLRDKAVLESRCGQNGVIERKTILTPRSDVTTYAIVTNVVQYSKTCKAALDSLSNGDLKKRKASVTGRKKKLCVFKAMEHGDSFFHYDQHGKSSSGLAIPLQQANTEIAAAINSNGGSNPNLIVRDKSKMPITNVTKIMRKILPNNAKVSDGAKEMIQQSATNYITFVTRKAKERCQSEYRKIMNADDLLWAIGNVGFDDYIGPLTTFLQRCRSIEGGISGPSFGPEPTMEIPHPPLPPPPVSSSGSDFSMHQNTDPEMFDSNGVSGYLDAVGSSNNAFINFDPFSLFQQDQL 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01905 696 FunFam NAD-dependent protein deacetylase SRT1 135 184 - -
Spst6g01905 696 SUPERFAMILY DHS-like NAD/FAD-binding domain 5 308 IPR029035 -
Spst6g01905 696 ProSiteProfiles Sirtuin catalytic domain profile. 27 283 IPR026590 -
Spst6g01905 696 Pfam Sir2 family 52 75 IPR003000 GO:0070403
Spst6g01905 696 Pfam Sir2 family 86 232 IPR003000 GO:0070403
Spst6g01905 696 PRINTS CCAAT-binding transcription factor subunit A signature 560 578 - -
Spst6g01905 696 PRINTS CCAAT-binding transcription factor subunit A signature 598 616 - -
Spst6g01905 696 PRINTS CCAAT-binding transcription factor subunit A signature 579 597 - -
Spst6g01905 696 MobiDBLite consensus disorder prediction 628 652 - -
Spst6g01905 696 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 532 596 IPR003958 -
Spst6g01905 696 CDD SIRT7 45 267 - -
Spst6g01905 696 Gene3D Histone, subunit A 527 621 IPR009072 GO:0046982
Spst6g01905 696 Gene3D - 135 184 - -
Spst6g01905 696 SUPERFAMILY Histone-fold 532 621 IPR009072 GO:0046982
Spst6g01905 696 PANTHER NAD-DEPENDENT HISTONE DEACETYLASE HST4 33 281 - -
Spst6g01905 696 MobiDBLite consensus disorder prediction 631 646 - -
Spst6g01905 696 FunFam NAD-dependent protein deacetylase sirtuin-6 isoform X2 36 134 - -
Spst6g01905 696 Gene3D - 36 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01905 Spst-Chr6 18186061 18200709 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01905 481 619 CCAAT-HAP3 Transcription Factor Family AT1G21970 41.935 7.71e-32 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Spst6g01905 SIR2 2.9e-17 CL0085
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01905 K11416 - gmx:100803586 876.315
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g01905 6 18186061 18200709 Spst6g01905 6 18186061 18200709 ECH