Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01904 ATGTCCTTCACAACCTCCATCCTCATCTTCATCATCTCAATCTTCTCATTTACAACAACCACAACCCTCTCTCACAACAACACAACCTTCTTCTCCTTCTCCTTCCCCTCCTTCACCCTCCGCAACATCACCCTCCTCGGCGACTCCTTCCTCCGCCACGGCCTCGTCGGCCTCACCCTGTCCACCATCGTCCCCGCTTCCTCCTCCGGCACCCTCCTCTTCAACAACCCCATCACCACCACCCCCAACTTCTCTCTCTCCACCACCTTCACCTTCTCCATCACCAACACCACTACTTCCACCACCCCCTCCTCCACGTTCTCCTTCTTCCTCAACTCCTCCCACACCCTCCTCTCCCTCCACTTCCACCCCAAGCAAAACCATCTCACCCTCGACCTCACCACCACCTTAAACTCCTCCCTTACCAGCCCCGTTCTCGTTGATCTCAGCACTGACACTCCGATCACTTCTTGGGTTGATTATCACCATGCTGACCAGAAAAAGCTCAACGTTTTCTTGAACTACTCGTCACCAGCCTCTTCTAAGCCTCAAAACCCTGTCTTGAGCGTTGACCTTGACCTCTCTGAGTATTTTAAGGACAGTCTCTACGTGGGGTTTTTCGGTTCCACTCAAGGAAGCACCGAGCTTATCCAAGTCATGAGTTGGAGTTTGGAGTTTGAGTCAAACTTGCACCCTCTGATCAATGATTCTAGCAGCCCTTCCAGTGTCGCGGTTGAGGGGATTCCTGTTTCTTCAAATTCCACTGAGGGCAGTAATAAGCGAGGCAAGAGGTTTTTGTTTGGTCTTTGTGTTGCTATTGCTGGTCCTTCTTTTTTCTGCGTTGTGCTTGTGGTTTTTGGGTATGTTTCTTTTCGTAAGTGGCGTGGTTTGAGGAAGAAGAAAGGTTTTGGGACAGTGGGGTGTTGTCCTAAAGAGTTTGGTTACAAGGAGGTGAAGTTGGCGACTAAGGGGTTTCATTCCTCAAAGGTAATTGGGAATGGATCTTTTGGGACAGTGTACAAGGCTTTGTTTGAATCTTCTGGGACCATAGCTGCGGTTAAAAGGTCAAGACAGTACGATGGAAAAACTGAGTTTTTGTCCGAATTATCTATTATAGCTAGTTTGAGGCACAAGAATTTGGTTCAACTCCTGGGTTGGTGTGTTGAGAAGGGTGAGTTGTTGCTTGTGTATGAGTATATGCCAAATGGAAGCTTGGACAAGGTGCTTTACCAAGAATGTGAAGGGGGGAATAATAACAATGTGCTGATTTGGGTTCATAGGGTTAACATTGCAGTTGGGTTGGCTTCTGTTTTGAGTTATTTGCATCAAGAGTGTGAGCAAAGGGTGATTCATAGGGACATCAAGACAGGGAACATATTGCTAGATGGGAGCATGAACCCAAGGTTGGGTGATTTTGGGTTGGCCAAGCTTATGGACCATGACAAGAGTCCTGTTTCAACACTAACTGCTGGGACAATGGGGTACCTTGCTCCTGAGTATCTTCAATGTGGAATGGCAACTGAGAAGACTGATGTGTTCAGCTATGGGGTGGTGGTGCTTGAGGTGGCTTGTGGGAGGAGGCCAATTGAGAAGGAGGGGCAGAAGATGGTGAATTTGGTGGATTGGGTTTGGGGGTTGCACTCTCAAGGGAAGATCATTGAGGCTGCTGATAGGAGGCTGAATGGGGATTTCAAGGAAGGAGAAATGAAGAGGCTTTTGCTCTTGGGGTTGAGTTGTGCTAACCCTGATAGTGCTCAAAGGCCTTCCATGAGAAGAGTGTTGCAGATTCTCAACAATGAAGGAGGAGTGTCTCTGGTGGTGCCTAAAGAGAAACCAACACTAACTTTCTCTTCTGGCTTGCCTTTGAGTCTCGAAGATATTGTTTCTGATGCCGAGGAAGACTTGAATTCTGGCCAGGTTGTGTGTGAGATCAGAATTGATTGA 1944 0.4805 MSFTTSILIFIISIFSFTTTTTLSHNNTTFFSFSFPSFTLRNITLLGDSFLRHGLVGLTLSTIVPASSSGTLLFNNPITTTPNFSLSTTFTFSITNTTTSTTPSSTFSFFLNSSHTLLSLHFHPKQNHLTLDLTTTLNSSLTSPVLVDLSTDTPITSWVDYHHADQKKLNVFLNYSSPASSKPQNPVLSVDLDLSEYFKDSLYVGFFGSTQGSTELIQVMSWSLEFESNLHPLINDSSSPSSVAVEGIPVSSNSTEGSNKRGKRFLFGLCVAIAGPSFFCVVLVVFGYVSFRKWRGLRKKKGFGTVGCCPKEFGYKEVKLATKGFHSSKVIGNGSFGTVYKALFESSGTIAAVKRSRQYDGKTEFLSELSIIASLRHKNLVQLLGWCVEKGELLLVYEYMPNGSLDKVLYQECEGGNNNNVLIWVHRVNIAVGLASVLSYLHQECEQRVIHRDIKTGNILLDGSMNPRLGDFGLAKLMDHDKSPVSTLTAGTMGYLAPEYLQCGMATEKTDVFSYGVVVLEVACGRRPIEKEGQKMVNLVDWVWGLHSQGKIIEAADRRLNGDFKEGEMKRLLLLGLSCANPDSAQRPSMRRVLQILNNEGGVSLVVPKEKPTLTFSSGLPLSLEDIVSDAEEDLNSGQVVCEIRID 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01904 647 Gene3D Phosphorylase Kinase; domain 1 297 399 - -
Spst6g01904 647 Gene3D - 29 119 - -
Spst6g01904 647 ProSiteProfiles Protein kinase domain profile. 325 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst6g01904 647 SUPERFAMILY Concanavalin A-like lectins/glucanases 29 226 IPR013320 -
Spst6g01904 647 Gene3D Transferase(Phosphotransferase) domain 1 400 603 - -
Spst6g01904 647 SMART serkin_6 325 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst6g01904 647 SUPERFAMILY Protein kinase-like (PK-like) 310 607 IPR011009 -
Spst6g01904 647 Pfam Legume lectin domain 123 231 IPR001220 GO:0030246
Spst6g01904 647 Pfam Protein kinase domain 325 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst6g01904 647 Gene3D - 120 267 - -
Spst6g01904 647 PANTHER - 60 599 - -
Spst6g01904 647 CDD STKc_IRAK 331 599 - -
Spst6g01904 647 FunFam L-type lectin-domain containing receptor kinase VIII.1 400 616 - -
Spst6g01904 647 ProSitePatterns Serine/Threonine protein kinases active-site signature. 449 461 IPR008271 GO:0004672|GO:0006468
Spst6g01904 647 ProSitePatterns Protein kinases ATP-binding region signature. 331 354 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01904 Spst-Chr6 18182193 18184136 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01904 1 633 Receptor kinase-like Gene Family AT5G55830 52.924 0.0 640
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Spst6g01904 Pkinase 3.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01904 - - vum:124824905 972.23