Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01886 ATGGAAATTGGGAGAGAGGGTGAGATTGTGGACATGTCCATTTCACCCCCAGTAGTTGGTTCCACTATTAACAATGACTTTTGTCAGCGCAAAGAGTTCATGTCACAGACATATCTTCAGAATAAGTACTCAGAGATTGACATAGACATTGAAGGTTCCAATTTCGAACAAAATCGCCCCCTCCCCATATTTCTCAAGTTTGACGATGTGAAGTATAAAGTGAGAAATAGACAAACAAGATCAGGTATCCTTGTGAAGACTATGGTGTCAAAGGCAACCTCACAACTCACTGTGAAGGTAGATAGATACAAGAAAATTTTAAAGGGTATCACAGGAAGCATAGGTCCTGGTGAAATTCTTGCCTTGATGGGTCCTTCTGGCAGTGGGAAGACAACCTTGTTGAGAGTTATAAGAGGAAGACTAGTTGACAATGTAAAGGGAAAAGTAACTTATAATGATGTTCGTTTCACTCCAGCTGTCAAGAGGAGGATTAGGTTTGTGACACAAGAGGATGTGTTTTCCCCACAATTAATTGTTGAAGAAACTTTAGTCTTCTCTGCACATTTGAGGCTACCAAGCAGTATGAGCAAGCAGCAAAAATATGCAAAAGTGGATACCACCATCAAGGAGCTAGGCCTAGCAAGATGTCGCCACACAAAAATAGCTGGAGGATATCTCAAGGTCATATTAGGAGGAGAAAGGAAAAGAACCTATATAGGCTATGAAATTCTTGTTGATCCTTCACTTCTGCTACTTGATGAACCGACTTTTGGCCTTGATTCCTCCTCAGCAAACAAAGTCCTTCTCACTTTGCAAGGACTTGCAAAGGCTGGAAGGACCATAATCACAATAATACATCAGCCATCCAGTGGAATCTTTCACATGTTTGACAAACTTCGTTTGATATCAGAAGGCTATCTTGTGTACTATGGAAAGGCTAAGGAAACAATGGAGTACTTTTCATCTTTGAGATTCACCCCTCAAATACCGATGAATCATGCAGAGTTCTTGCTTGACTTGGCAACTAGACAAGTGAATGACATAAGTTTTCCGGCTGATATCTTTCAAGATCAAGAATCTTCTGACCCTTCAAAAGTTGTTATTGAACTAAAGCTAGTTCAAGCACTTGGAATTGCACTTTTGTTGGGGCTCCTTTGGTGGAACTCTTCAACCAATACTGAAGCTCAACTCAGAGATCAGGTTGGTTTAGCATTCTACATCTGTATATTCTGGACATCTTCATGCATTTTTGGAGCAGACTATATCTTTCCATTTGAGCAGGCTTACTTGATAAAAGAAAGGAAAGCTGACATGTACAGATTAAGTGTATACTATGCATGTAGCACTCTATGTGACATGGTGGCACATATTTGCTATCCTACTTTTTTCATGCTCATCTTGTACCTCATAGCTGGCTTTATGAGAAATGTTGCTTCCTTCTTCTTGACACTATTGTCGCAAACAAAATTGTAG 1473 0.3999 MEIGREGEIVDMSISPPVVGSTINNDFCQRKEFMSQTYLQNKYSEIDIDIEGSNFEQNRPLPIFLKFDDVKYKVRNRQTRSGILVKTMVSKATSQLTVKVDRYKKILKGITGSIGPGEILALMGPSGSGKTTLLRVIRGRLVDNVKGKVTYNDVRFTPAVKRRIRFVTQEDVFSPQLIVEETLVFSAHLRLPSSMSKQQKYAKVDTTIKELGLARCRHTKIAGGYLKVILGGERKRTYIGYEILVDPSLLLLDEPTFGLDSSSANKVLLTLQGLAKAGRTIITIIHQPSSGIFHMFDKLRLISEGYLVYYGKAKETMEYFSSLRFTPQIPMNHAEFLLDLATRQVNDISFPADIFQDQESSDPSKVVIELKLVQALGIALLLGLLWWNSSTNTEAQLRDQVGLAFYICIFWTSSCIFGADYIFPFEQAYLIKERKADMYRLSVYYACSTLCDMVAHICYPTFFMLILYLIAGFMRNVASFFLTLLSQTKL 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01886 490 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 65 329 IPR003439 GO:0005524
Spst6g01886 490 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 370 486 - -
Spst6g01886 490 Pfam ABC-2 type transporter 286 337 IPR043926 GO:0140359
Spst6g01886 490 Pfam ABC transporter 107 256 IPR003439 GO:0005524
Spst6g01886 490 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 96 322 IPR027417 -
Spst6g01886 490 SMART AAA_5 116 307 IPR003593 GO:0016887
Spst6g01886 490 Pfam ABC-2 type transporter 370 485 IPR013525 GO:0016020|GO:0140359
Spst6g01886 490 Gene3D - 92 324 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01886 Spst-Chr6 18066475 18069225 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01886 105 290 Calmodulin-binding Proteins AT2G36910 29.187 2.09e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01886 K05681 - gmx:100806094 599.356