Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01882 ATGGCTTCATTTCCTTCAAATTCTACATCAGATCATACGATGGCCAATGCACAATACAGCCACCCTCAAGCTTCCTCACCTTCTTTCATGACTAGAGTGGCCATGAGAATATCTAGATCAAGATGGTTTACCTTCTTGAGAAAAGTATTCCATTACCAAAATGGACCAAGATCTGATCTTGGCTCCAACCCTTTCAATTCTAGCACTTGGATGATGCTGGAGTTTATTACTTTGCTGGTCCAGATATCAAGCACAACACTCACTTTGGCCATTTCAAAGAGTGAGAAGCCTATTTGGCCTATGAGGGTGTGGATAGCAGGTTATGATATTGGCTGTGTCCTTAATCTTCTGCTACTTTGTGGCCGGTACTATCAACTCCATGTAACTCAAGGAGGTGGTCTTACCCTTTCTGATTTGGAGCAGCAGAGAAACAATGAAGAATCAAGTGTGTTGAGAGACTCACATGTGATGGAGAAATGCAGAAGTTCTCTAGAGCTTTTCTTTGCCATATGGTTTGTGATGGGCAATGTTTGGGCCTTTGACTCACGTTTTGGGTCATTCGAACAAGCTCCAAAACTGCAGGTGCTATGCATGATCCTACTTGCATGGAATGCAATATGCTACTCTTTTCCTTTTCTGCTGTTTTTGCTCTTGTGTTGTTGTGTGCCACTGATGAGCACCCTCCTTGGATACAACATGAGCATGGGCTCCTCTGCTAGAGGGGCATCTGATGATCAAATCTCACAACTCCCAAGTTGGAGATTCAAAGGGGCTCACACCAACTTGGACTTCGCCAATGACTCTCAAAGCACTCAAAGATTGATCAATGATGATCCAGAATGCTGCATTTGCTTGGCCAAGTACAAAGACAAAGAAGAAGTTAGGCAATTGCCATGTTCCCATTTGTTCCACCTAAAATGTGTGGATCAATGGCTTAGAATTATATCATGTTGCCCCCTCTGTAAACAAGGATTACAAAGATAA 984 0.4289 MASFPSNSTSDHTMANAQYSHPQASSPSFMTRVAMRISRSRWFTFLRKVFHYQNGPRSDLGSNPFNSSTWMMLEFITLLVQISSTTLTLAISKSEKPIWPMRVWIAGYDIGCVLNLLLLCGRYYQLHVTQGGGLTLSDLEQQRNNEESSVLRDSHVMEKCRSSLELFFAIWFVMGNVWAFDSRFGSFEQAPKLQVLCMILLAWNAICYSFPFLLFLLLCCCVPLMSTLLGYNMSMGSSARGASDDQISQLPSWRFKGAHTNLDFANDSQSTQRLINDDPECCICLAKYKDKEEVRQLPCSHLFHLKCVDQWLRIISCCPLCKQGLQR 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01882 327 SMART ring_2 281 321 IPR001841 -
Spst6g01882 327 Pfam RING-like zinc finger 280 308 IPR001841 -
Spst6g01882 327 SUPERFAMILY RING/U-box 272 325 - -
Spst6g01882 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 231 326 IPR013083 -
Spst6g01882 327 ProSiteProfiles Zinc finger RING-type profile. 281 322 IPR001841 -
Spst6g01882 327 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 8 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01882 Spst-Chr6 18049357 18051341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01882 29 325 C3H Transcription Factor Family AT4G26580 66.667 6.04e-141 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01882 - - gmx:100818715 602.438