Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01874 ATGTCTTCCCTGCCTCCTCATTCCAACTTGGACACCACTCGATCTCATCAGGTTCCTATTACTACTCAAGTTGTTCCCATGGCGTCGAATCATGTTCTCTCTGCTTCTACCATGTCATTAGAGGAAATTTTATCCAAAGAAGATGACTTTAATTGGGCTGATGTTTTCAACTACGCACAGCGCTTAATACCTGAGACTATTAGTCACAAAGAATGCAAACATTGGACTAAAGAGGAACACAGGTTATTTCTCGTAGGACTTCACATGTATGGTCGAAAATGGACAAAAATTTCAGAACATCTTATTCCCTCAAAAACTCCAAGTCAAATTGCTAGTCATGGTCAAAAGTACTTTCTTCATAAGACCCAAAATAAAGAGAAAAAGAGGAAAAGCATTCATGATACAACATTACAAGGCATTGCCACTGTCATTGTTCCTCACTACATTAATAATATAGACACGTTGGTTCCTCCTGCACCAAATTTTGCAGTGCAACCGCATAAAATTCTAGTACAACAACATATGATGCATTTTAACTTCCTATATAACTCAAATGCCTGA 561 0.3797 MSSLPPHSNLDTTRSHQVPITTQVVPMASNHVLSASTMSLEEILSKEDDFNWADVFNYAQRLIPETISHKECKHWTKEEHRLFLVGLHMYGRKWTKISEHLIPSKTPSQIASHGQKYFLHKTQNKEKKRKSIHDTTLQGIATVIVPHYINNIDTLVPPAPNFAVQPHKILVQQHMMHFNFLYNSNA 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01874 186 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 57 145 IPR043363 -
Spst6g01874 186 CDD SANT 75 118 IPR001005 -
Spst6g01874 186 ProSiteProfiles SANT domain profile. 70 125 IPR017884 -
Spst6g01874 186 NCBIfam myb-like DNA-binding domain, SHAQKYF class 73 121 IPR006447 GO:0003677
Spst6g01874 186 SMART sant 71 120 IPR001005 -
Spst6g01874 186 ProSiteProfiles Myb-like domain profile. 75 118 IPR001005 -
Spst6g01874 186 Gene3D - 74 123 - -
Spst6g01874 186 Pfam Myb-like DNA-binding domain 74 117 IPR001005 -
Spst6g01874 186 SUPERFAMILY Homeodomain-like 69 121 IPR009057 -
Spst6g01874 186 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 122 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01874 Spst-Chr6 17858831 17860534 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Spst6g01874 Myb_DNA-binding 9.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01874 - - vra:106754349 112.464