Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01871 ATGCTTGCTTTGCTACCGTATTATTTATGCCTAAGTATACTGTTATGTACATACCACTACTGTAAGCTGCCATACCACATAATAGTAGGGCTTCCCTTGCTGTGGGTAGCATTTTGCCTCGGCAAACCCTTCCTTCACCCTTATCTGTTTCCTCATAAAATAGTTGCTGGTGCGACCAATGATGCATTATACAAGGAATTGTGGCATGCCTGTGCTGGACCCCTTGTCACGCTCCCGCGTGAAGGGGAGAGAGTTTATTACTTCCCCCAAGGTCACATGGAACAGCTCGAGGCATCTATGAATCAGGTATTGGAGCAGCAAATGCCTTCCTTTAATCTACCTTCCAAAATATTATGTAAAGTGGTCAATGTTCATCTTCGAGCTGAACCTGAGACAGATGAAGTATATGCACAAATAACTTTACTTCCTGAAGCAGATCAAAGCGAGGTGACAAGCCCTGACAATCCTCTGGCTGAACCTCCAAGGTGTACAGTTCATTCATTTTGCAAGACACTCACTGCTTCTGACACTAGCACCCATGGGGGTTTCTCTGTTCTTCGAAGACATGCAGATGATTGTTTGCCACCACTGGATATGACTCAGCAGCCACCATGGCAAGAATTGGTCGCAACTGATCTGCACGGCAATGAATGGCATTTTAGACATATTTTTCGAGGGCAACCCAGGCGCCACTTACTGACCACTGGGTGGAGTGTCTTTGTCAGTTCCAAAAAGTTAGTGGCTGGTGATGCATTTATATTCTTAAGGGGTGAAAATGGAGAGCTGCGAGTAGGGGTTAGGAGGCTCATGAGACAGCAAAGCAACATGCCATCTTCTGTTATTTCCAGTCACAGTATGCATCTGGGTGTTCTGGCCACTGCATCTCATGCCATTGCCACAGGAACGTTGTTTTCTGTATTTTACAAGCCCAGAACTAGCCGGTCTGAATTTATTGTGAGTGTCAACAAGTATCTTGAAGCTCAAAATCATAAACTTTCTGTTGGGATGAGATTCAAAATGAGATTTGAGGGTGATGAAGTTCCTGAAAGAAGGTTCAGTGGTACAATTGTGGGTGTTGGAGATAATAAATCTTCAGTCTGGACTGATTCAGAGTGGCGATCATTAAAGGTTCAATGGGATGAACCATCATCTATTTTGCGTCCTGATAGAGTTTCTCCATGGGAATTGGAGCCACTTTTGTCTTCCCCTCCTACAAACACCCAGCCATCCCAAAGAAACAAGAGATCACGGCCTCCCATTCTACCTTCAACAATTCCTGATTCTTCTCTGCAAGGTGTATGGAAATCACCAGTTGATTCTGTGCCATTCTCTTATCGTGACCATCAACATGGGCGAGACATCTTTCCATCACCCAAATTCAATTCTACTACAACTGGCTTCCTTGGTTTTGGTGGGAATTGTTCTGCTTCCAACAAATCAATATATTGGTCAAGTAGGACTGAAAACACGACAGAATCTTTTTCACCTTTAGCACTTAAAGAATCTGGAGAGAAAAGACAAGGGACTGCAAATGGATGTAGGCTCTTTGGGATTCAGTTACTTGATAATTCTAATGGGGAAGAGCTACCAATGGTCGCTTTATCAGGAAGGGTGGGTGATGATGGCCCCCTTCCATCTTTGGATGCTGACTCTGACCAGCATTCTGAACCATCAAATATTAATCGATCTGATATTCCTTCAGTAAGCTGTGATGCTGAAAAATCATGCCTGCGGTCTCCCCAGGAGTCTCAGAGCAGGCAAATAAGAAGCTGCACAAAGGTTCACATGCAAGGTATGGCTGTCGGAAGGGCTGTGGATTTAACACGGTTTGATGGATATGAGGATCTGCTAAGGAAATTGGAAGAAATGTTTGACATCAAGGATGAGCTCTGTGGATCCACCAAAAAATGGCAGGTTGTGTACACTGATAATGAAGATGATATGATGATGGTTGGGGATGATCCATGGCTTGAGTTTTGTAGCATTGTGAGGAAAATTTTCATTTACACTGCAGAGGAAGTAAAGAAGCTTTCACCCAAAATTGGACTTCCAATCAGTGAAGAAGTTAAACCCAGCAAAATGGACTGTGAAGCAGTAGTCAATCCCGAGGACCAGTCATCTATTGAAGTAGAACGTGAGAGAAACGAGTATGGACATGGCAAGCACTTCGTCATGGCCTATAGGAGAAAAATGAGAATGAACCTGGCAAACACTTCCTCATTGCCTAGAAGGAGCATGTCATCTCTACAGGAACAGCATGACAGCACCAAAGCAGAGGGTTGA 2283 0.4402 MLALLPYYLCLSILLCTYHYCKLPYHIIVGLPLLWVAFCLGKPFLHPYLFPHKIVAGATNDALYKELWHACAGPLVTLPREGERVYYFPQGHMEQLEASMNQVLEQQMPSFNLPSKILCKVVNVHLRAEPETDEVYAQITLLPEADQSEVTSPDNPLAEPPRCTVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMTQQPPWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQQSNMPSSVISSHSMHLGVLATASHAIATGTLFSVFYKPRTSRSEFIVSVNKYLEAQNHKLSVGMRFKMRFEGDEVPERRFSGTIVGVGDNKSSVWTDSEWRSLKVQWDEPSSILRPDRVSPWELEPLLSSPPTNTQPSQRNKRSRPPILPSTIPDSSLQGVWKSPVDSVPFSYRDHQHGRDIFPSPKFNSTTTGFLGFGGNCSASNKSIYWSSRTENTTESFSPLALKESGEKRQGTANGCRLFGIQLLDNSNGEELPMVALSGRVGDDGPLPSLDADSDQHSEPSNINRSDIPSVSCDAEKSCLRSPQESQSRQIRSCTKVHMQGMAVGRAVDLTRFDGYEDLLRKLEEMFDIKDELCGSTKKWQVVYTDNEDDMMMVGDDPWLEFCSIVRKIFIYTAEEVKKLSPKIGLPISEEVKPSKMDCEAVVNPEDQSSIEVERERNEYGHGKHFVMAYRRKMRMNLANTSSLPRRSMSSLQEQHDSTKAEG 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01871 760 Gene3D - 165 270 IPR015300 -
Spst6g01871 760 ProSiteProfiles PB1 domain profile. 589 682 IPR000270 GO:0005515
Spst6g01871 760 Pfam B3 DNA binding domain 168 268 IPR003340 GO:0003677
Spst6g01871 760 Gene3D - 584 678 - -
Spst6g01871 760 MobiDBLite consensus disorder prediction 737 753 - -
Spst6g01871 760 FunFam Auxin response factor 166 270 - -
Spst6g01871 760 CDD B3_DNA 166 268 IPR003340 GO:0003677
Spst6g01871 760 ProSiteProfiles B3 DNA-binding domain profile. 168 270 IPR003340 GO:0003677
Spst6g01871 760 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 62 678 IPR044835 GO:0003677|GO:0006355|GO:0009725
Spst6g01871 760 SUPERFAMILY CAD & PB1 domains 591 666 - -
Spst6g01871 760 MobiDBLite consensus disorder prediction 535 566 - -
Spst6g01871 760 MobiDBLite consensus disorder prediction 737 760 - -
Spst6g01871 760 SMART B3_2 168 270 IPR003340 GO:0003677
Spst6g01871 760 Pfam Auxin response factor 294 376 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Spst6g01871 760 SUPERFAMILY DNA-binding pseudobarrel domain 155 297 IPR015300 -
Spst6g01871 760 MobiDBLite consensus disorder prediction 399 433 - -
Spst6g01871 760 MobiDBLite consensus disorder prediction 396 433 - -
Spst6g01871 760 Gene3D - 331 403 - -
Spst6g01871 760 Pfam AUX/IAA family 586 679 IPR033389 -
Spst6g01871 760 FunFam Auxin response factor 331 403 - -
Spst6g01871 760 FunFam Auxin response factor 584 678 - -
Spst6g01871 760 MobiDBLite consensus disorder prediction 551 566 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01871 Spst-Chr6 17757785 17763144 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01871 56 707 B3 DNA Binding Superfamily AT1G59750 72.424 0.0 940
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Spst6g01871 AUX_IAA 1.8e-11 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01871 K14486 - gmx:100793224 1243.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g01871 6 17757785 17763144 Spst6g01871 6 17757785 17763144 ECH