Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01869 ATGCAGTTGCTGGAGCAGGAGGAGGCGGAGAGAATGCAGAGGGACAGGATCCTCTTTCAGGAGAGGGAGAAGGCTTTCATGGATATCATAATCACCCGGCAAGAGCAAGAGCAAGAGCAAGAGCGAGAGCGAGAACAAGAGCAGAGCATCGATCATGATCATGACCATGACAATGAATTTGACTACGCGGTGGAGGAAGAAGGCCCGCCAGAGATTATTTGGCAAGGGAACGAGATCATCTTCAAGAAGAAGCAAGTCAGAGTTAGGGTTACGGACCCGGACAATCACAATAACCATTCGCAGCAGCGTGGGGACAATAGACCTACGTCCAATCCCTTACCTCCGGAATCCGAATCGCACACTCAGACCCTCCAGGATGTTGCTCAACAAGTGCCTAATTTCGGAACTGAACAGATACACGCCATGTATGAAGAGGTTGAACGCTGTTTTGAAGAATTTTATGAGGATGTCCACACAGAATTCTTGAAGTTTGGGGAAATTGTGAACTTCAAGGTCTGTAAAAATGGCTCATTTCACTTGCGAGGAAATGTTTATGTACAGTATAAATCATTGGATTCTGCTCTGCTTGCTTTTAACTCGGTGAATGCTCGCTACTTTGCTGGAAAACAGGTAAGTTGTCAATTTGTTAACTTGACAAGATGGAAGGTTGCCATATGTGGCGAGTATATGAAATCAGGTTTCAAGACTTGTTCTCATGGAACAGCATGCAATTTTATTCACTGTTTTCGTAATCCTGGTGGAGATTATGAATGGGCTGATTCTGACAAACCTCCTCCAAAATTTTGGGTAAAAAAGATGATCGCTTTATTTGGTTATTCTGATGATTACGAGACTTCAAGGGAGCAAGGAAATCTGAGTTTGTCAAAAATAGATTCTGAGAGGTACTACTCTAGAAGGTCAAGATCTACGGAGATGGATCAGTTAAATTGTGGTCATTCTGGTAGAAGAAAACAGGAAGATGAAAGAAAGCAAAGAACTCCCGATGAGAACCGGAGTGCCACCTTCAAAAACAATCATAAAAGAAGATCCAGGGGCAGAACTCCTGATACTGATTCTGACAGAGAATGGTTAGAAAAGGAGGAAAATAGGGAAAGACGCCATGAATACACTAGGAATGGCACATTTAACAAGAACAGGGATGACAATAGAAGAAGCCAAGGGGATTCTGATGTGGATTGTGATAGTAGGCACAATGAAAAACGGCATGGTAGAGAAGGAAGAAACCCAAGAAAGTGCAATAGGGATATCAGGGTCTGCATTAACGAGGCTGGGCTGGATGGGGATAGGGTTGAGAAAAGGCAACGTCTTAGCGAAAGCCCAAGACATCAAAGTGGCGATGCTTCTGAATCCCACAAAGATTTGTTTGGTAGAGTGGCGATGGAAACACATGATTACTCACGGAAAAGCTCGAGACACAGAAGATCGGGTCTCCAGGATGACTATAGATACTATGAGACTGAAAATGACAAAGCTGATGGAGATTGGTCTCGGAAGCAGAGTTACAAACGAGAACATCATCACAAAAAGAAGAGATCAAAACATTAG 1566 0.4349 MQLLEQEEAERMQRDRILFQEREKAFMDIIITRQEQEQEQEREREQEQSIDHDHDHDNEFDYAVEEEGPPEIIWQGNEIIFKKKQVRVRVTDPDNHNNHSQQRGDNRPTSNPLPPESESHTQTLQDVAQQVPNFGTEQIHAMYEEVERCFEEFYEDVHTEFLKFGEIVNFKVCKNGSFHLRGNVYVQYKSLDSALLAFNSVNARYFAGKQVSCQFVNLTRWKVAICGEYMKSGFKTCSHGTACNFIHCFRNPGGDYEWADSDKPPPKFWVKKMIALFGYSDDYETSREQGNLSLSKIDSERYYSRRSRSTEMDQLNCGHSGRRKQEDERKQRTPDENRSATFKNNHKRRSRGRTPDTDSDREWLEKEENRERRHEYTRNGTFNKNRDDNRRSQGDSDVDCDSRHNEKRHGREGRNPRKCNRDIRVCINEAGLDGDRVEKRQRLSESPRHQSGDASESHKDLFGRVAMETHDYSRKSSRHRRSGLQDDYRYYETENDKADGDWSRKQSYKREHHHKKKRSKH 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01869 521 PRINTS U2 auxiliary factor small subunit signature 202 226 IPR009145 GO:0000398|GO:0003723|GO:0089701
Spst6g01869 521 PRINTS U2 auxiliary factor small subunit signature 147 162 IPR009145 GO:0000398|GO:0003723|GO:0089701
Spst6g01869 521 PRINTS U2 auxiliary factor small subunit signature 240 252 IPR009145 GO:0000398|GO:0003723|GO:0089701
Spst6g01869 521 PRINTS U2 auxiliary factor small subunit signature 175 197 IPR009145 GO:0000398|GO:0003723|GO:0089701
Spst6g01869 521 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 130 404 IPR009145 GO:0000398|GO:0003723|GO:0089701
Spst6g01869 521 MobiDBLite consensus disorder prediction 437 521 - -
Spst6g01869 521 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 221 249 IPR000571 GO:0046872
Spst6g01869 521 ProSiteProfiles Zinc finger C3H1-type profile. 220 250 IPR000571 GO:0046872
Spst6g01869 521 MobiDBLite consensus disorder prediction 303 417 - -
Spst6g01869 521 MobiDBLite consensus disorder prediction 102 121 - -
Spst6g01869 521 MobiDBLite consensus disorder prediction 92 121 - -
Spst6g01869 521 MobiDBLite consensus disorder prediction 35 56 - -
Spst6g01869 521 Gene3D - 93 216 IPR012677 -
Spst6g01869 521 SMART rrm2_1 148 214 IPR003954 GO:0003676
Spst6g01869 521 MobiDBLite consensus disorder prediction 317 343 - -
Spst6g01869 521 SUPERFAMILY RNA-binding domain, RBD 150 218 IPR035979 GO:0003676
Spst6g01869 521 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 155 218 IPR000504 GO:0003723
Spst6g01869 521 SMART c3hfinal6 220 249 IPR000571 GO:0046872
Spst6g01869 521 MobiDBLite consensus disorder prediction 437 507 - -
Spst6g01869 521 MobiDBLite consensus disorder prediction 351 417 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Spst6g01869 zf-CCCH 1.2e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01869 K24273 - gmx:100789091 664.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g01869 6 17746988 17753925 Spst6g01869 6 17746988 17753925 ECH