Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01861 ATGCAACAGCTTCTTCGTGGTCTGGAGCATTGTCACAGTCGTGGTGTTATGCATCGTGACATAAAATGCTCAAATCTTCTGCTTGACAGTAATGGCAAACTGAAGATTGGTGATTTCGGGCTAGCAACTTTGCTTCCGCCATCTCAAGGGCAGCCTTTAACGAGTCGGGTGGTAACCTTGTGGTACAGACCACCTGAACTTTTACTTGGAGCTACAGATTACGGAGTTACTGTGGATCTGTGGAGTGCTGGATGTATTCTTGCACAGTTGTTTGTTGGGAAGCCTATTATGTCTGGACGAACAGAGGTAGAGCAACTACATAAAATCTTCAAACTTTGTGGATCTCCTTCTGAAGAATACTGGATGAAGTCAAAGCTACCTCACGCAACAATTTTTAAACCTCAACATGCTTACAAACGTGCTGTTTCTCAGATATTCAAAGATCTTCCTTCATCTACACTGAGCCTCTTGGATGTCCTTCTTGCGGTAGAATCGAACAATCGAGGAACTGCATCTTCAGCGCTTCAACATGAGTTCTTTACAACAATGCCACTTCCTTGTGATCCATCATCTTTGCCAAAGTACCCACCGAGTAAGGAGTTTGATGCTAAAATTCGCCAAGAGGAAGCTAGAAGCAAGCAAATAGCACCAAATAAAGGACATGGACATGAATCAGTTGGGAGTAGTTTTAGAGACTCTAAAGCTGTGCCAATACCTAATGCGAATGCTGAGTTTCAGGCAACTTTGGCGAGACAGGGACGGTCTTATTCTAAGCGCGTCACTGAGAAGTACAATCCCGAGGATGATGGCGGTTATGGCTTCACTCGTGAACCTGTAAAGTCAAGAGTACTCAATGTATTATCTCATTCTGGCCAGTCAATGCATCCAAGTGTTTATGGATCACGCAATATGAATTTGGAAGAGGAAGATGTCCTCATATACCCTGAGCATAGCTATATATCAAGAAAGTCCGAGTTGAGAAAACAAAATTCCCGTTGGCAAGGTAGCATTGCAAAATTGTCAAGATTTTCTAATTCAATTGCACTTCGAGGTGATTCACTGCTTGATATGAGTGGTGACTTAAGTGTGAATTTGCAGTTGCCAGAAGATCAATTTGGCATGAGATATAGCCATGCGGCTGATGGTGAGTCCAACCAACCGTTGGATGGACTTTCATAG 1179 0.4317 MQQLLRGLEHCHSRGVMHRDIKCSNLLLDSNGKLKIGDFGLATLLPPSQGQPLTSRVVTLWYRPPELLLGATDYGVTVDLWSAGCILAQLFVGKPIMSGRTEVEQLHKIFKLCGSPSEEYWMKSKLPHATIFKPQHAYKRAVSQIFKDLPSSTLSLLDVLLAVESNNRGTASSALQHEFFTTMPLPCDPSSLPKYPPSKEFDAKIRQEEARSKQIAPNKGHGHESVGSSFRDSKAVPIPNANAEFQATLARQGRSYSKRVTEKYNPEDDGGYGFTREPVKSRVLNVLSHSGQSMHPSVYGSRNMNLEEEDVLIYPEHSYISRKSELRKQNSRWQGSIAKLSRFSNSIALRGDSLLDMSGDLSVNLQLPEDQFGMRYSHAADGESNQPLDGLS 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01861 392 SUPERFAMILY Protein kinase-like (PK-like) 1 188 IPR011009 -
Spst6g01861 392 ProSiteProfiles Protein kinase domain profile. 1 180 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst6g01861 392 Pfam Protein kinase domain 1 180 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst6g01861 392 ProSitePatterns Serine/Threonine protein kinases active-site signature. 16 28 IPR008271 GO:0004672|GO:0006468
Spst6g01861 392 Gene3D Transferase(Phosphotransferase) domain 1 1 219 - -
Spst6g01861 392 SMART serkin_6 1 180 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst6g01861 392 MobiDBLite consensus disorder prediction 213 232 - -
Spst6g01861 392 FunFam probable serine/threonine-protein kinase At1g54610 1 220 - -
Spst6g01861 392 PANTHER CELL DIVISION PROTEIN KINASE 1 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01861 Spst-Chr6 17675390 17677529 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01861 1 216 Core Cell Cycle Gene Families AT5G10270 50.691 1.60e-68 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Spst6g01861 Pkinase 2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01861 - - gmx:100805055 623.624