Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01856 ATGGCTCTGATCCTCCACTCACCCCCAAATAACAAGAATGCTATCAAGTCTCTCATCGCGGCAGAGTACGCTGGCGTCCAACTGGAATTGGCCCCTAATTTCGAGATGCTTGTCTCCAATAGAACTCCTGAGTTCCTCAAGATGAATCCTATTGGAAAGGTTCCTGTGTTGGAAACCCCTGATGGTCCAATCTTTGAAAGCAATGCTATTGCTCGTTATGTTGCTCGACTCAAGGGTGACAACGTATTGTACCTCTCTACTCCCATTGATAACGCCCGCATTGAACAGTGGATTGATTTTTCATCTTTCGAGATCGATAACAATGTTCTGAAATTGTACCTACCAAGACTTGGATATATGCCATACCATCAACCTATCGAGGAGGCTGCAAACTCTTCGTTGAAGAAAGCATTCCAGGCCTTGAACACTCACCTTGCCTCTAACACTTACCTTGTTGGGCATTCCGTTACCCTTGCTGACATCATAACAACATGCAACTTGTACTTAGGTTTCACCCAGATCTTAGTCAAGAGCTTCACTTCGGAGTTCCCTCATGTTGAGAGATACTTCTGGACCTTGGTCAACCAGCCTAATTTCCGAAAGACATTAGGTCAGGTTAAGCAAATAGAAACTATTCCACCTATTCCATCTGCGAAGAAGCCTTCCCAGCCCAAGGAGTCTAAGCCCAAACCTAAGGATGAGCCGAAGAAAGTGGCTAAGCCGGAGCCAGAAAAGCTTAAAGAAGCGGAAGAGGAGGCACCCAAGCCCAAGCCCAAAAATCCTCTTGATCTTCTTCCTCCAAGCACGATGATATTGGATGAGTGGAAAAGACTCTACTCAAACACTAAGACCAACTTCCGAGAGGTTGCAATCAAAGGATTCTGGGACATGTATGATCCAGAGGGATATTCTCTCTGGTTCTGTGATTACAAATACAATGATGAGAACACTGTTTCCTTTGTGACGCTAAACAAGGTTGGTGGATTTCTTCAGAGGATGGATCTGGCTCGCAAGTATGCTTTTGGAAAGATGCTTGTGATTGGATCACAGGCACCATTTAAGGTGAAGGGGTTGTGGCTTTTCCGCGGGCAAGAGATTCCGCAATTTGTGATTGATGAATGCTATGATATGGAGCTGTACGAGTGGACAAAGGTTGATATCTATGATGAAAATCAGAAAGAGCGGGTCAATCAGATGATTGAGGATTATGAACCATTTGAGGGAGAATCTCTTTTGGATGCCAAATGCTTTAAGTGA 1257 0.4455 MALILHSPPNNKNAIKSLIAAEYAGVQLELAPNFEMLVSNRTPEFLKMNPIGKVPVLETPDGPIFESNAIARYVARLKGDNVLYLSTPIDNARIEQWIDFSSFEIDNNVLKLYLPRLGYMPYHQPIEEAANSSLKKAFQALNTHLASNTYLVGHSVTLADIITTCNLYLGFTQILVKSFTSEFPHVERYFWTLVNQPNFRKTLGQVKQIETIPPIPSAKKPSQPKESKPKPKDEPKKVAKPEPEKLKEAEEEAPKPKPKNPLDLLPPSTMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSQAPFKVKGLWLFRGQEIPQFVIDECYDMELYEWTKVDIYDENQKERVNQMIEDYEPFEGESLLDAKCFK 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01856 418 Pfam Glutathione S-transferase, N-terminal domain 1 76 IPR004045 -
Spst6g01856 418 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 258 418 IPR036433 GO:0003746|GO:0006414
Spst6g01856 418 CDD GST_N_EF1Bgamma 5 77 - -
Spst6g01856 418 FunFam Elongation factor 1 gamma 80 215 - -
Spst6g01856 418 CDD GST_C_EF1Bgamma_like 90 211 - -
Spst6g01856 418 Pfam Glutathione S-transferase, C-terminal domain 124 197 IPR004046 -
Spst6g01856 418 SFLD Glutathione Transferase (cytosolic) 4 190 IPR040079 -
Spst6g01856 418 SUPERFAMILY eEF1-gamma domain 258 418 IPR036433 GO:0003746|GO:0006414
Spst6g01856 418 FunFam Elongation factor 1-gamma 1 258 418 - -
Spst6g01856 418 MobiDBLite consensus disorder prediction 223 258 - -
Spst6g01856 418 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 258 418 IPR001662 GO:0003746|GO:0006414
Spst6g01856 418 SMART EF1G_2 257 365 IPR001662 GO:0003746|GO:0006414
Spst6g01856 418 SFLD Main (cytGST) 4 190 - -
Spst6g01856 418 FunFam Elongation factor 1B gamma 1 74 - -
Spst6g01856 418 SUPERFAMILY Thioredoxin-like 2 81 IPR036249 -
Spst6g01856 418 SUPERFAMILY GST C-terminal domain-like 73 213 IPR036282 -
Spst6g01856 418 Gene3D - 81 213 - -
Spst6g01856 418 PANTHER ELONGATION FACTOR 1-GAMMA 1-RELATED 1 418 IPR044628 GO:0004364
Spst6g01856 418 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 82 IPR004045 -
Spst6g01856 418 Gene3D Glutaredoxin 1 74 - -
Spst6g01856 418 MobiDBLite consensus disorder prediction 210 265 - -
Spst6g01856 418 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 87 215 IPR010987 -
Spst6g01856 418 Pfam Elongation factor 1 gamma, conserved domain 257 365 IPR001662 GO:0003746|GO:0006414
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01856 Spst-Chr6 17663596 17665526 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01856 1 418 Eukaryotic Initiation Factors Gene Family AT1G57720 72.967 0.0 621
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01856 K03233 - gmx:100795680 680.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g01856 6 17663596 17665526 Spst6g01856 6 17663596 17665526 ECH