Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01831 ATGGAAGAGTTTGAGTTTGAAGAGGTTGTAAAAGCAACAGAAAACTTCAACCCCAGAAGGATCATAGGGAAAGGAAGCCATGGCATGGTGTACAAAGGCGTTGTTCGATTCAAAGATAACAACAGGTTGGTCGCTGTAAAGAAGCCATCACAAGGCCTTCAATCTCTTCACGACAACTCCAAACTCGAAAACGAAATCCGAGTGCTGTCCTCTCTACGCGAAAACCCTCACGTGGTTAATCTTTTAGGAACGACGAGAGGTGATGATCGCGAGAATAACAAGGTCATTGTGATGGAGTTCATGCCCAATGGTTCTCTCCATGACTTGCTTCATGCCAATGAAACCCCACCTACGTGGCCTAAACGCGTTGAAATCGCCATGCAAGTCGCTCGTGCGGTGCAGTTTCTTCACGAAGGTAAGCCTGCGGTGATTCACAGAGACATTAAACCCTCCAACATATTGTTTGATTCACATTGGAATGCGAAGTTGGCAGATTTTGGACTCGCGGTGAAAGGGGTTGACCCAGTGAGTCAACCCGCCGGGACCATAGGGTACTTGGACCCGTGTTACACCACCCCAGATAAACTCAGCGCCAAAAACGACATTTTCAGCTTTGGGGTTGTGTTGTTGGAGATCATAAGTGGTAGAAAGGCCATTGATGTGTGCAAAACGCCGGCTTCAGTTGTGGAATGGGCGATTCAATTAATGGCGGAACAACTTTTGAAAGAGATTTGTGACTCAAGAATGGCACTGCCACGTTACATGGTTGGAACAATCACTCCCATGTTACGCTATGCTATACGTTGCGTCTCTGAAAACGAAGATGAACGACCTTCGGCCACTGAAATTGTTATGGAAATGGAAAATTGGTTAGTGAAACGTATTAAGTTTCCGATTTGGAAGTGTCTTTTGAACGGGTTAGTTCGGTTGAAAAGGAAGAAATCGATGAAGAGTATTGTTTGGCAAACTAAGACACGGATTCGGTGTATAACTGATGATGAAGAGGACGAGGATGACAGTGTTGGCGTTGGTGGTGTCCCAAGCGGGAAGATATCCATGACCATAAGGGAGGTTTTAGCTGATGTTACATTGGAGTAA 1098 0.4563 MEEFEFEEVVKATENFNPRRIIGKGSHGMVYKGVVRFKDNNRLVAVKKPSQGLQSLHDNSKLENEIRVLSSLRENPHVVNLLGTTRGDDRENNKVIVMEFMPNGSLHDLLHANETPPTWPKRVEIAMQVARAVQFLHEGKPAVIHRDIKPSNILFDSHWNAKLADFGLAVKGVDPVSQPAGTIGYLDPCYTTPDKLSAKNDIFSFGVVLLEIISGRKAIDVCKTPASVVEWAIQLMAEQLLKEICDSRMALPRYMVGTITPMLRYAIRCVSENEDERPSATEIVMEMENWLVKRIKFPIWKCLLNGLVRLKRKKSMKSIVWQTKTRIRCITDDEEDEDDSVGVGGVPSGKISMTIREVLADVTLE 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01831 365 SMART serkin_6 16 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst6g01831 365 Gene3D Phosphorylase Kinase; domain 1 1 100 - -
Spst6g01831 365 PANTHER OS01G0253100 PROTEIN 2 289 - -
Spst6g01831 365 FunFam Serine/threonine-protein kinase-like protein At5g23170 101 297 - -
Spst6g01831 365 Pfam Protein kinase domain 19 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst6g01831 365 ProSitePatterns Protein kinases ATP-binding region signature. 22 48 IPR017441 GO:0005524
Spst6g01831 365 Gene3D Transferase(Phosphotransferase) domain 1 101 297 - -
Spst6g01831 365 SUPERFAMILY Protein kinase-like (PK-like) 3 299 IPR011009 -
Spst6g01831 365 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672|GO:0006468
Spst6g01831 365 ProSiteProfiles Protein kinase domain profile. 16 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01831 Spst-Chr6 17479364 17480461 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01831 4 298 Receptor kinase-like Gene Family AT3G59420 39.016 1.48e-55 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Spst6g01831 Pkinase 1.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01831 - - lang:109334080 433.721